Listening on http://127.0.0.1:35591 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 34328 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5505 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5505 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 231 workflowtemplate step id 226 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 5505 Selected workflows ids: 5506 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5505 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 231 workflowtemplate step id 226 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5506 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 5505 Selected workflows ids: 5506 Selected workflows ids: 5508 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5505 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 231 workflowtemplate step id 226 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5506 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5508 workflowtemplate step id 250 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5505 Selected workflows ids: 5506 Selected workflows ids: 5508 Selected workflows ids: 5509 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5505 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 231 workflowtemplate step id 226 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5506 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5508 workflowtemplate step id 250 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5509 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5505 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 231 workflowtemplate step id 226 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5506 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5508 workflowtemplate step id 250 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5509 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34328.pdf bfabricUpload Execution halted