Listening on http://127.0.0.1:46171
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

saving 'login and webservicepassword' ...
In function read_workflowid
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user lkunz
Bfabric query: workflow containerid = 34548
saving 'login and webservicepassword' ...
In function read_templatefile
Bfabric query: dataset id
Selected workflows ids: 5657

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 5657
workflowtemplate step id  239 
workflowtemplate step id  240 
workflowtemplate step id  239 
workflowtemplate step id  225 
workflowtemplate step id  239 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

Selected workflows ids: 5657
Selected workflows ids: 5771

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 5657
workflowtemplate step id  239 
workflowtemplate step id  240 
workflowtemplate step id  239 
workflowtemplate step id  225 
workflowtemplate step id  239 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 5771
workflowtemplate step id  266 
workflowtemplate step id  266 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 58
workflowtemplate name: Proteomics Data acquisition

saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
generateReport
In function read_steptemplateid
Bfabric query: workflowstep workflowid = 5657
workflowtemplate step id  239 
workflowtemplate step id  240 
workflowtemplate step id  239 
workflowtemplate step id  225 
workflowtemplate step id  239 

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 5771
workflowtemplate step id  266 
workflowtemplate step id  266 



processing file: report.Rmd
output file: report.knit.md


Output created: fgcz_order_report-34548.pdf
bfabricUpload


Execution halted