Listening on http://127.0.0.1:46509 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 34 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 349 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 34943 Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5923 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 5923 Selected workflows ids: 5931 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Selected workflows ids: 5923 Selected workflows ids: 5931 Selected workflows ids: 5936 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 5923 Selected workflows ids: 5931 Selected workflows ids: 5936 Selected workflows ids: 5939 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5939 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Selected workflows ids: 5923 Selected workflows ids: 5931 Selected workflows ids: 5936 Selected workflows ids: 5939 Selected workflows ids: 5945 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5939 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5945 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Selected workflows ids: 5923 Selected workflows ids: 5931 Selected workflows ids: 5936 Selected workflows ids: 5939 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5939 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5923 Selected workflows ids: 5931 Selected workflows ids: 5936 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 5923 Selected workflows ids: 5931 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 5923 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 34 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 349 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 34943 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5923 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 5923 Selected workflows ids: 5931 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 5923 Selected workflows ids: 5931 Selected workflows ids: 5936 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: 5923 Selected workflows ids: 5931 Selected workflows ids: 5936 Selected workflows ids: 5939 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5939 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5923 Selected workflows ids: 5931 Selected workflows ids: 5936 Selected workflows ids: 5939 Selected workflows ids: 5945 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5939 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5945 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5939 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5945 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34943.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5939 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5945 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34943.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5939 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5945 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34943.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5939 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5945 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34943.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5939 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5945 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34943.pdf bfabricUpload saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 34 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 349 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 34943 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5923 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 5923 Selected workflows ids: 5931 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 5923 Selected workflows ids: 5931 Selected workflows ids: 5936 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: 5923 Selected workflows ids: 5931 Selected workflows ids: 5936 Selected workflows ids: 5939 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5939 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 5923 Selected workflows ids: 5931 Selected workflows ids: 5936 Selected workflows ids: 5939 Selected workflows ids: 5945 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 5939 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 5945 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5923 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 287 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5931 workflowtemplate step id 239 workflowtemplate step id 233 workflowtemplate step id 287 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5936 workflowtemplate step id 266 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5939 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5945 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34943.pdf bfabricUpload Execution halted