Listening on http://127.0.0.1:42075 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 34689 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 5963 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5963 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 5963 Selected workflows ids: 6036 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5963 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6036 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 5963 Selected workflows ids: 6036 Selected workflows ids: 6037 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5963 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6036 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6037 workflowtemplate step id 249 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 5963 Selected workflows ids: 6036 Selected workflows ids: 6037 Selected workflows ids: 6038 In function read_steptemplateid Bfabric query: workflowstep workflowid = 5963 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6036 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6037 workflowtemplate step id 249 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 6038 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 5963 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6036 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6037 workflowtemplate step id 249 workflowtemplate step id 248 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6038 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-34689.pdf bfabricUpload Execution halted