Listening on http://127.0.0.1:33141 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user schesnov Bfabric query: workflow containerid = 35477 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 6424 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6424 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 6424 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-35477.pdf bfabricUpload saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user heinzmann Bfabric query: workflow containerid = 35407 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 6366 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6366 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 6366 Selected workflows ids: 6370 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6366 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6370 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 6366 Selected workflows ids: 6370 Selected workflows ids: 6373 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6366 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6370 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6373 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... Selected workflows ids: 6366 Selected workflows ids: 6370 Selected workflows ids: 6373 Selected workflows ids: 6390 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6366 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6370 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6373 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6390 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 6366 workflowtemplate step id 230 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6370 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6373 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 225 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6390 workflowtemplate step id 266 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-35407.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 6366 workflowtemplate step id 230 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6370 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6373 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 225 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6390 workflowtemplate step id 266 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-35407.pdf bfabricUpload saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user schesnov Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 354 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_workflowid Bfabric query: workflow containerid = 35480 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 6425 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6425 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 6425 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-35480.pdf bfabricUpload bfabricUpload Execution halted