Listening on http://127.0.0.1:46379 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 35682 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 6584 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6584 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 6584 Selected workflows ids: 6585 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6584 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6585 workflowtemplate step id 244 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 6584 Selected workflows ids: 6585 Selected workflows ids: 6590 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6584 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6585 workflowtemplate step id 244 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6590 workflowtemplate step id 251 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 6584 Selected workflows ids: 6585 Selected workflows ids: 6590 Selected workflows ids: 6603 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6584 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6585 workflowtemplate step id 244 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6590 workflowtemplate step id 251 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 6603 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 6584 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6585 workflowtemplate step id 244 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6590 workflowtemplate step id 251 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6603 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-35682.pdf bfabricUpload Execution halted