Listening on http://127.0.0.1:38989
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

saving 'login and webservicepassword' ...
In function read_workflowid
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user schesnov
Bfabric query: workflow containerid = 3
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append
  120: <reactive:read_workflowid> [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125]
  104: read_workflowid
   97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135]
   96: func
   83: renderFunc
   82: output$workflow
    1: runApp
In function read_workflowid
Bfabric query: workflow containerid = 35
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125]
  120: <reactive:read_workflowid> [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125]
  104: read_workflowid
   97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135]
   96: func
   83: renderFunc
   82: output$workflow
    1: runApp
In function read_workflowid
Bfabric query: workflow containerid = 35732
saving 'login and webservicepassword' ...
In function read_templatefile
Bfabric query: dataset id
Selected workflows ids: 6609

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 6609
workflowtemplate step id  277 
workflowtemplate step id  280 
workflowtemplate step id  275 
workflowtemplate step id  289 
workflowtemplate step id  277 
workflowtemplate step id  280 
workflowtemplate step id  275 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 61
workflowtemplate name: Analysis procedure: Purified Biomolecules

saving 'login and webservicepassword' ...
generateReport
In function read_steptemplateid
Bfabric query: workflowstep workflowid = 6609
workflowtemplate step id  277 
workflowtemplate step id  280 
workflowtemplate step id  275 
workflowtemplate step id  289 
workflowtemplate step id  277 
workflowtemplate step id  280 
workflowtemplate step id  275 



processing file: report.Rmd
output file: report.knit.md


Output created: fgcz_order_report-35732.pdf
bfabricUpload


Execution halted