Listening on http://127.0.0.1:35521 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user paolo Bfabric query: workflow containerid = 36030 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 6907 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6907 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 232 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 6907 Selected workflows ids: 6911 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6907 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 232 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6911 workflowtemplate step id 243 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 6907 Selected workflows ids: 6911 Selected workflows ids: 6922 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6907 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 232 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6911 workflowtemplate step id 243 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6922 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 6907 Selected workflows ids: 6911 Selected workflows ids: 6922 Selected workflows ids: 6947 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6907 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 232 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6911 workflowtemplate step id 243 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6922 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 6947 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 6907 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 232 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6911 workflowtemplate step id 243 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6922 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6947 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36030.pdf bfabricUpload Execution halted