Listening on http://127.0.0.1:38831 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 36188 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 6987 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 6987 Selected workflows ids: 6991 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6991 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 6987 Selected workflows ids: 6991 Selected workflows ids: 6992 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6991 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6992 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 6987 Selected workflows ids: 6991 Selected workflows ids: 6992 Selected workflows ids: 6993 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6991 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6992 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 36188 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 6987 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 6987 Selected workflows ids: 6991 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6991 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: 6987 Selected workflows ids: 6991 Selected workflows ids: 6992 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6991 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6992 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... Selected workflows ids: 6987 Selected workflows ids: 6991 Selected workflows ids: 6992 Selected workflows ids: 6993 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6991 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6992 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 6987 Selected workflows ids: 6991 Selected workflows ids: 6992 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6991 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6992 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 6987 Selected workflows ids: 6991 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6991 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Execution halted