Listening on http://127.0.0.1:37451 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 36188 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 6987 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 6987 Selected workflows ids: 6991 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6991 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 6987 Selected workflows ids: 6991 Selected workflows ids: 6992 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6991 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6992 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 6987 Selected workflows ids: 6991 Selected workflows ids: 6992 Selected workflows ids: 6993 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6991 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6992 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 6993 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6991 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6992 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6993 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36188.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 6987 workflowtemplate step id 239 workflowtemplate step id 224 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6991 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6992 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6993 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36188.pdf bfabricUpload Execution halted