Listening on http://127.0.0.1:35759 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user paolo Bfabric query: workflow containerid = 36073 saving 'login and webservicepassword' ... In function read_templatefile Bfabric query: dataset id Selected workflows ids: 6950 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6950 workflowtemplate step id 239 workflowtemplate step id 233 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 6950 Selected workflows ids: 6951 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6950 workflowtemplate step id 239 workflowtemplate step id 233 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6951 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 6950 Selected workflows ids: 6951 Selected workflows ids: 6955 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6950 workflowtemplate step id 239 workflowtemplate step id 233 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6951 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6955 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 6950 Selected workflows ids: 6951 Selected workflows ids: 6955 Selected workflows ids: 7019 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6950 workflowtemplate step id 239 workflowtemplate step id 233 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 6951 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 6955 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7019 workflowtemplate step id 290 workflowtemplate step id 259 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 6950 workflowtemplate step id 239 workflowtemplate step id 233 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6951 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 6955 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7019 workflowtemplate step id 290 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36073.pdf bfabricUpload Execution halted