Listening on http://127.0.0.1:40689
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

saving 'login and webservicepassword' ...
In function read_workflowid
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user cfortes
Bfabric query: workflow containerid = 36261
saving 'login and webservicepassword' ...
In function read_templatefile
Bfabric query: dataset id
Selected workflows ids: 7009

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7009
workflowtemplate step id  230 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

Selected workflows ids: 7009
Selected workflows ids: 7014

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7009
workflowtemplate step id  230 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7014
workflowtemplate step id  244 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 58
workflowtemplate name: Proteomics Data acquisition

Selected workflows ids: 7009
Selected workflows ids: 7014
Selected workflows ids: 7020

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7009
workflowtemplate step id  230 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7014
workflowtemplate step id  244 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 58
workflowtemplate name: Proteomics Data acquisition

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7020
workflowtemplate step id  247 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 59
workflowtemplate name: Proteomics Data analysis

Selected workflows ids: 7009
Selected workflows ids: 7014
Selected workflows ids: 7020
Selected workflows ids: 7026

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7009
workflowtemplate step id  230 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7014
workflowtemplate step id  244 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 58
workflowtemplate name: Proteomics Data acquisition

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7020
workflowtemplate step id  247 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 59
workflowtemplate name: Proteomics Data analysis

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7026
workflowtemplate step id  256 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 60
workflowtemplate name: Proteomics Results

saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
generateReport
In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7009
workflowtemplate step id  230 

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7014
workflowtemplate step id  244 

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7020
workflowtemplate step id  247 

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7026
workflowtemplate step id  256 



processing file: report.Rmd
output file: report.knit.md


Output created: fgcz_order_report-36261.pdf
bfabricUpload


Execution halted