Listening on http://127.0.0.1:45429
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

saving 'login and webservicepassword' ...
In function read_workflowid
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
In function read_workflowid
Request started from user roschi
Bfabric query: workflow containerid = 36331
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
In function read_templatefile
Bfabric query: dataset id
Selected workflows ids: 7201

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7201
workflowtemplate step id  236 
workflowtemplate step id  238 
workflowtemplate step id  225 
workflowtemplate step id  239 
workflowtemplate step id  232 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

Selected workflows ids: 7201
Selected workflows ids: 7240

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7201
workflowtemplate step id  236 
workflowtemplate step id  238 
workflowtemplate step id  225 
workflowtemplate step id  239 
workflowtemplate step id  232 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7240
workflowtemplate step id  244 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 58
workflowtemplate name: Proteomics Data acquisition

Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Selected workflows ids: 7201
Selected workflows ids: 7240
Selected workflows ids: 7241

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7201
workflowtemplate step id  236 
workflowtemplate step id  238 
workflowtemplate step id  225 
workflowtemplate step id  239 
workflowtemplate step id  232 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7240
workflowtemplate step id  244 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 58
workflowtemplate name: Proteomics Data acquisition

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7241
workflowtemplate step id  285 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 59
workflowtemplate name: Proteomics Data analysis

Selected workflows ids: 7201
Selected workflows ids: 7240
Selected workflows ids: 7241
Selected workflows ids: 7242

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7201
workflowtemplate step id  236 
workflowtemplate step id  238 
workflowtemplate step id  225 
workflowtemplate step id  239 
workflowtemplate step id  232 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 57
workflowtemplate name: Proteomics Sample Preparation

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7240
workflowtemplate step id  244 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 58
workflowtemplate name: Proteomics Data acquisition

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7241
workflowtemplate step id  285 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 59
workflowtemplate name: Proteomics Data analysis

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7242
workflowtemplate step id  259 

In function read_workflowtemplate
Bfabric query: workflowtemplate workflowtemplateid = 60
workflowtemplate name: Proteomics Results

Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
generateReport
In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7201
workflowtemplate step id  236 
workflowtemplate step id  238 
workflowtemplate step id  225 
workflowtemplate step id  239 
workflowtemplate step id  232 

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7240
workflowtemplate step id  244 

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7241
workflowtemplate step id  285 

In function read_steptemplateid
Bfabric query: workflowstep workflowid = 7242
workflowtemplate step id  259 



processing file: report.Rmd
output file: report.knit.md


Output created: fgcz_order_report-36331.pdf
bfabricUpload


Execution halted