Listening on http://127.0.0.1:43159 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user chiawei Bfabric query: workflow containerid = 36507 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 227 workflowtemplate step id 243 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 307 workflowtemplate step id 225 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 279 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 239 workflowtemplate step id 288 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 225 workflowtemplate step id 272 workflowtemplate step id 269 workflowtemplate step id 269 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 248 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 285 workflowtemplate step id 236 workflowtemplate step id 238 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 307 workflowtemplate step id 224 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 240 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 227 workflowtemplate step id 243 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 307 workflowtemplate step id 225 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 279 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 239 workflowtemplate step id 288 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 225 workflowtemplate step id 272 workflowtemplate step id 269 workflowtemplate step id 269 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 248 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 285 workflowtemplate step id 236 workflowtemplate step id 238 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 307 workflowtemplate step id 224 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 240 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 227 workflowtemplate step id 243 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 307 workflowtemplate step id 225 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 279 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 239 workflowtemplate step id 288 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 225 workflowtemplate step id 272 workflowtemplate step id 269 workflowtemplate step id 269 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 248 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 285 workflowtemplate step id 236 workflowtemplate step id 238 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 307 workflowtemplate step id 224 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 240 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 227 workflowtemplate step id 243 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 307 workflowtemplate step id 225 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 279 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 239 workflowtemplate step id 288 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 225 workflowtemplate step id 272 workflowtemplate step id 269 workflowtemplate step id 269 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 248 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 285 workflowtemplate step id 236 workflowtemplate step id 238 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 307 workflowtemplate step id 224 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 240 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7261 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7261 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7261 Selected workflows ids: 7271 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7261 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7271 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 7261 Selected workflows ids: 7271 Selected workflows ids: 7272 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7261 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7271 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7272 workflowtemplate step id 260 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7261 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7271 workflowtemplate step id 291 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7272 workflowtemplate step id 260 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36507.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7261 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7271 workflowtemplate step id 291 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7272 workflowtemplate step id 260 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36507.pdf bfabricUpload Execution halted