Listening on http://127.0.0.1:43281 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user cfortes Bfabric query: workflow containerid = 36735 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 279 workflowtemplate step id 266 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 279 workflowtemplate step id 266 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 279 workflowtemplate step id 266 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 279 workflowtemplate step id 266 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 36 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 367 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 3673 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36734 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 279 workflowtemplate step id 266 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 279 workflowtemplate step id 266 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 279 workflowtemplate step id 266 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 279 workflowtemplate step id 266 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7381 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7381 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... Selected workflows ids: 7381 Selected workflows ids: 7396 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7381 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7396 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7381 Selected workflows ids: 7396 Selected workflows ids: 7390 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7381 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7396 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7390 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7381 Selected workflows ids: 7396 Selected workflows ids: 7390 Selected workflows ids: 7393 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7381 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7396 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7390 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7393 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7381 workflowtemplate step id 230 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7396 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7390 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7393 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36734.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user schesnov Bfabric query: workflow containerid = 366 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36680 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules Selected workflows ids: 7403 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7403 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid In function read_templatefile In function read_templatefile In function read_templatefile In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user wuethrich Bfabric query: workflow containerid = 36662 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules Selected workflows ids: 7364 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7364 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... Selected workflows ids: 7364 Selected workflows ids: 7400 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7364 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7400 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7364 Selected workflows ids: 7400 Selected workflows ids: 7401 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7364 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7400 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7401 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 7364 Selected workflows ids: 7400 Selected workflows ids: 7401 Selected workflows ids: 7402 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7364 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7400 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7401 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7402 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7403 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36680.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7364 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7400 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7401 workflowtemplate step id 291 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7402 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36662.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user schesnov Bfabric query: workflow containerid = 36703 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 283 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules Selected workflows ids: 7404 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7404 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7404 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36703.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_templatefile In function read_templatefile Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. In function read_workflowid Request started from user roschi Bfabric query: workflow containerid = 36620 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7348 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7348 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7348 Selected workflows ids: 7365 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7348 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7365 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Selected workflows ids: 7348 Selected workflows ids: 7365 Selected workflows ids: 7382 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7348 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7365 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7382 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7348 Selected workflows ids: 7365 Selected workflows ids: 7382 Selected workflows ids: 7392 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7348 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7365 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7382 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7392 workflowtemplate step id 256 workflowtemplate step id 258 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7348 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7365 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7382 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7392 workflowtemplate step id 256 workflowtemplate step id 258 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36620.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user schesnov Bfabric query: workflow containerid = 36 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 3677 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36772 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7409 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7409 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7409 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36772.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid In function read_templatefile In function read_templatefile In function read_templatefile In function read_templatefile In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user nbionda Bfabric query: workflow containerid = 36752 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 271 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7407 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7407 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7407 Selected workflows ids: 7408 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7407 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7408 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7407 Selected workflows ids: 7408 Selected workflows ids: 7413 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7407 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7408 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7413 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7407 Selected workflows ids: 7408 Selected workflows ids: 7413 Selected workflows ids: 7416 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7407 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7408 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7413 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7416 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7407 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7408 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7413 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7416 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36752.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user wuethrich Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 367 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 3676 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36760 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 workflowtemplate step id 230 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7418 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7418 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7418 Selected workflows ids: 7419 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7418 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7419 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7418 Selected workflows ids: 7419 Selected workflows ids: 7420 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7418 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7419 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7420 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7418 Selected workflows ids: 7419 Selected workflows ids: 7420 Selected workflows ids: 7421 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7418 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7419 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7420 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7421 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7418 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7419 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7420 workflowtemplate step id 291 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7421 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36760.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user cfortes Bfabric query: workflow containerid = 36779 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 230 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 289 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 36492 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7383 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7383 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7383 Selected workflows ids: 7406 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7383 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7406 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7383 Selected workflows ids: 7406 Selected workflows ids: 7423 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7383 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7406 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7423 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7383 Selected workflows ids: 7406 Selected workflows ids: 7423 Selected workflows ids: 7432 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7383 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7406 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7423 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7432 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7383 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7406 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7423 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7432 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36492.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 36630 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7354 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7354 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7354 Selected workflows ids: 7369 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7354 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7369 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7354 Selected workflows ids: 7369 Selected workflows ids: 7434 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7354 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7369 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7434 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7354 Selected workflows ids: 7369 Selected workflows ids: 7434 Selected workflows ids: 7435 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7354 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7369 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7434 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7435 workflowtemplate step id 259 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7354 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7369 workflowtemplate step id 266 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7434 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7435 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36630.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 36528 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 278 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 36 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36528 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7333 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7333 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7333 Selected workflows ids: 7344 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7333 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7344 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7333 Selected workflows ids: 7344 Selected workflows ids: 7350 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7333 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7344 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7350 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7333 Selected workflows ids: 7344 Selected workflows ids: 7350 Selected workflows ids: 7436 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7333 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7344 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7350 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7436 workflowtemplate step id 259 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7333 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7344 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7350 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7436 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36528.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user cfortes Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36779 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7412 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7412 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7412 Selected workflows ids: 7417 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7412 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7417 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: 7412 Selected workflows ids: 7417 Selected workflows ids: 7430 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7412 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7417 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7430 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7412 Selected workflows ids: 7417 Selected workflows ids: 7430 Selected workflows ids: 7431 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7412 workflowtemplate step id 228 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7417 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7430 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7431 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user cfortes Bfabric query: workflow containerid = 36779 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 258 workflowtemplate step id 254 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7412 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7412 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7412 Selected workflows ids: 7417 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7412 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7417 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7412 Selected workflows ids: 7417 Selected workflows ids: 7430 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7412 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7417 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7430 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7412 Selected workflows ids: 7417 Selected workflows ids: 7430 Selected workflows ids: 7431 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7412 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7417 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7430 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7431 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7412 workflowtemplate step id 230 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7417 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7430 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7431 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36779.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 366 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36665 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7353 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7353 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7353 Selected workflows ids: 7370 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7353 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7370 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7353 Selected workflows ids: 7370 Selected workflows ids: 7399 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7353 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7370 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7399 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7353 Selected workflows ids: 7370 Selected workflows ids: 7399 Selected workflows ids: 7442 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7353 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7370 workflowtemplate step id 266 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7399 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7442 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7353 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7370 workflowtemplate step id 266 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7399 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7442 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36665.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 36 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36698 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 244 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7377 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7377 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7377 Selected workflows ids: 7422 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7377 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7422 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7377 Selected workflows ids: 7422 Selected workflows ids: 7424 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7377 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7422 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7424 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7377 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7422 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7424 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36698.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7377 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7422 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7424 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36698.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user nbionda Bfabric query: workflow containerid = 36735 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Selected workflows ids: 7395 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7395 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7395 Selected workflows ids: 7397 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7395 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7397 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Selected workflows ids: 7395 Selected workflows ids: 7397 Selected workflows ids: 7428 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7395 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7397 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7428 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7395 Selected workflows ids: 7397 Selected workflows ids: 7428 Selected workflows ids: 7429 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7395 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7397 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7428 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7429 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7395 workflowtemplate step id 230 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7397 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7428 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7429 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36735.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user schesnov Bfabric query: workflow containerid = 36 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 368 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 3680 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36809 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 273 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 247 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 239 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 272 workflowtemplate step id 232 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules Selected workflows ids: 7443 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7443 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7443 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36809.pdf bfabricUpload Execution halted