Listening on http://127.0.0.1:36805 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 36698 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7462 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7462 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7462 Selected workflows ids: 7485 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7462 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7485 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7462 Selected workflows ids: 7485 Selected workflows ids: 7424 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7462 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7485 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7424 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7462 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7485 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7424 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36698.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7462 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7485 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7424 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36698.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user schesnov Bfabric query: workflow containerid = 32 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 3295 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 32951 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules Selected workflows ids: 7490 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7490 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7490 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 165: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#65] 149: read_analysistype 148: eventReactiveValueFunc [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#285] 104: report 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#343] 96: func 83: renderFunc 82: output$downloadReportButton 1: runApp generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7490 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 Warning: Error in $: $ operator is invalid for atomic vectors 151: 150: stop 149: read_analysistype 148: eventReactiveValueFunc [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#285] 104: report 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#343] 96: func 83: renderFunc 82: output$downloadReportButton 1: runApp generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7490 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 Warning: Error in $: $ operator is invalid for atomic vectors 151: 150: stop 149: read_analysistype 148: eventReactiveValueFunc [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#285] 104: report 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#343] 96: func 83: renderFunc 82: output$downloadReportButton 1: runApp In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 36675 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7439 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7439 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7439 Selected workflows ids: 7464 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7439 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7464 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7439 Selected workflows ids: 7464 Selected workflows ids: 7492 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7439 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7464 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7492 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7439 Selected workflows ids: 7464 Selected workflows ids: 7492 Selected workflows ids: 7493 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7439 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7464 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7492 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7493 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7439 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7464 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7492 workflowtemplate step id 248 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7493 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36675.pdf bfabricUpload Execution halted