Listening on http://127.0.0.1:43637 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 36770 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7441 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7441 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7441 Selected workflows ids: 7484 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7441 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7484 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7441 Selected workflows ids: 7484 Selected workflows ids: 7487 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7441 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7484 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7487 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7441 Selected workflows ids: 7484 Selected workflows ids: 7487 Selected workflows ids: 7491 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7441 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7484 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7487 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7491 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7441 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7484 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7487 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7491 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36770.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7441 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7484 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7487 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7491 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36770.pdf bfabricUpload Execution halted