Listening on http://127.0.0.1:39137 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user wuethrich Bfabric query: workflow containerid = 36873 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 271 workflowtemplate step id 257 workflowtemplate step id 257 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 277 workflowtemplate step id 278 workflowtemplate step id 257 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 241 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 224 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 273 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 227 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 280 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7494 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7494 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7494 Selected workflows ids: 7497 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7494 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7497 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7494 Selected workflows ids: 7497 Selected workflows ids: 7506 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7494 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7497 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7506 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7494 Selected workflows ids: 7497 Selected workflows ids: 7506 Selected workflows ids: 7507 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7494 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7497 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7506 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7507 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7494 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7497 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7506 workflowtemplate step id 291 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7507 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36873.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7494 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7497 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7506 workflowtemplate step id 291 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7507 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36873.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user hubert Bfabric query: workflow containerid = -1 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 0 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 1 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user wuethrich Bfabric query: workflow containerid = 36 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 369 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 3690 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36908 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7517 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7517 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7517 Selected workflows ids: 7518 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7517 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7518 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7517 Selected workflows ids: 7518 Selected workflows ids: 7519 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7517 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7518 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7519 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7517 Selected workflows ids: 7518 Selected workflows ids: 7519 Selected workflows ids: 7520 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7517 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7518 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7519 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7520 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user schesnov Bfabric query: workflow containerid = 36877 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7511 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7511 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7511 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36877.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user wuethrich Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 369 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 3690 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36908 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 232 workflowtemplate step id 248 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 290 workflowtemplate step id 256 workflowtemplate step id 259 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7517 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7517 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7517 Selected workflows ids: 7518 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7517 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7518 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7517 Selected workflows ids: 7518 Selected workflows ids: 7519 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7517 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7518 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7519 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7517 Selected workflows ids: 7518 Selected workflows ids: 7519 Selected workflows ids: 7520 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7517 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7518 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7519 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7520 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7517 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7518 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7519 workflowtemplate step id 291 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7520 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36908.pdf bfabricUpload Execution halted