Listening on http://127.0.0.1:34099 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 36 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_templatefile In function read_workflowid Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_templatefile In function read_templatefile In function read_workflowid Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_templatefile In function read_templatefile In function read_workflowid Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_templatefile In function read_workflowid Request started from user spfammatter Bfabric query: workflow containerid = 368 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 138: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 137: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile In function read_workflowid Bfabric query: workflow containerid = 36856 Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: 7505 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7505 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7505 Selected workflows ids: 7523 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7505 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7523 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7505 Selected workflows ids: 7523 Selected workflows ids: 7540 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7505 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7523 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7540 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7505 Selected workflows ids: 7523 Selected workflows ids: 7540 Selected workflows ids: 7541 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7505 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7523 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7540 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7541 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7505 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7523 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7540 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7541 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36856.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7505 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7523 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7540 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7541 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36856.pdf bfabricUpload In function read_templatefile In function read_workflowid Bfabric query: workflow containerid = 3685 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 138: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 137: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile In function read_workflowid Bfabric query: workflow containerid = 36858 Bfabric query: dataset id Selected workflows ids: 7505 Selected workflows ids: 7523 Selected workflows ids: 7540 Selected workflows ids: 7541 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7505 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7523 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7540 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7541 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7504 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7504 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7504 Selected workflows ids: 7524 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7504 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7524 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7504 Selected workflows ids: 7524 Selected workflows ids: 7543 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7504 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7524 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7543 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Selected workflows ids: 7504 Selected workflows ids: 7524 Selected workflows ids: 7543 Selected workflows ids: 7544 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7504 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7524 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7543 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7544 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7504 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7524 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7543 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7544 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36858.pdf bfabricUpload In function read_templatefile In function read_workflowid Bfabric query: workflow containerid = 36893 Bfabric query: dataset id Selected workflows ids: 7504 Selected workflows ids: 7524 Selected workflows ids: 7543 Selected workflows ids: 7544 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7504 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7524 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7543 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7544 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 232 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7503 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7503 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7503 Selected workflows ids: 7525 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7503 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7525 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7503 Selected workflows ids: 7525 Selected workflows ids: 7539 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7503 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7525 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7539 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7503 Selected workflows ids: 7525 Selected workflows ids: 7539 Selected workflows ids: 7542 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7503 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7525 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7539 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7542 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7503 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7525 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7539 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7542 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36893.pdf bfabricUpload Execution halted