Listening on http://127.0.0.1:43227 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user roschi Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 369 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 3697 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36972 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7629 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7629 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7629 Selected workflows ids: 7670 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7629 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7670 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: 7629 Selected workflows ids: 7670 Selected workflows ids: 7671 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7629 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7670 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7671 workflowtemplate step id 249 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7629 Selected workflows ids: 7670 Selected workflows ids: 7671 Selected workflows ids: 7672 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7629 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7670 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7671 workflowtemplate step id 249 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7672 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7629 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7670 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7671 workflowtemplate step id 249 workflowtemplate step id 248 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7672 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36972.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7629 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7670 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7671 workflowtemplate step id 249 workflowtemplate step id 248 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7672 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36972.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36978 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 232 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 232 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 232 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 232 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7654 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7654 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7654 Selected workflows ids: 7660 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7654 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7660 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7654 Selected workflows ids: 7660 Selected workflows ids: 7680 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7654 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7660 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7680 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7654 Selected workflows ids: 7660 Selected workflows ids: 7680 Selected workflows ids: 7681 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7654 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7660 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7680 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7681 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 36 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36978 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7654 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7654 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7654 Selected workflows ids: 7660 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7654 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7660 workflowtemplate step id 244 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7654 Selected workflows ids: 7660 Selected workflows ids: 7680 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7654 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7660 workflowtemplate step id 244 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7680 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7654 Selected workflows ids: 7660 Selected workflows ids: 7680 Selected workflows ids: 7681 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7654 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7660 workflowtemplate step id 244 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7680 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7681 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7654 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7660 workflowtemplate step id 244 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7680 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7681 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36978.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_templatefile In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user roschi Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37028 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7630 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7630 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... Selected workflows ids: 7630 Selected workflows ids: 7655 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7630 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7655 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7630 Selected workflows ids: 7655 Selected workflows ids: 7656 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7630 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7655 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7656 workflowtemplate step id 249 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7630 Selected workflows ids: 7655 Selected workflows ids: 7656 Selected workflows ids: 7683 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7630 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7655 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7656 workflowtemplate step id 249 workflowtemplate step id 248 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7683 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7630 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7655 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7656 workflowtemplate step id 249 workflowtemplate step id 248 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7683 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37028.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 370 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37027 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7635 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7635 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7635 Selected workflows ids: 7644 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7635 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7644 workflowtemplate step id 244 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7635 Selected workflows ids: 7644 Selected workflows ids: 7684 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7635 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7644 workflowtemplate step id 244 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7684 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7635 Selected workflows ids: 7644 Selected workflows ids: 7684 Selected workflows ids: 7688 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7635 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7644 workflowtemplate step id 244 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7684 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7688 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 370 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37027 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7635 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7635 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7635 Selected workflows ids: 7644 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7635 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7644 workflowtemplate step id 266 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7635 Selected workflows ids: 7644 Selected workflows ids: 7684 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7635 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7644 workflowtemplate step id 266 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7684 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7635 Selected workflows ids: 7644 Selected workflows ids: 7684 Selected workflows ids: 7688 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7635 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7644 workflowtemplate step id 266 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7684 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7688 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7635 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7644 workflowtemplate step id 266 workflowtemplate step id 243 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7684 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7688 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37027.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user roschi Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37036 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 280 workflowtemplate step id 244 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 230 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 227 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 249 workflowtemplate step id 248 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 283 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 248 workflowtemplate step id 257 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 227 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7628 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7628 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7628 Selected workflows ids: 7679 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7628 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7679 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7628 Selected workflows ids: 7679 Selected workflows ids: 7685 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7628 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7679 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7685 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7628 Selected workflows ids: 7679 Selected workflows ids: 7685 Selected workflows ids: 7686 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7628 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7679 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7685 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7686 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 7628 Selected workflows ids: 7679 Selected workflows ids: 7685 Selected workflows ids: 7686 Selected workflows ids: 7687 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7628 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7679 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7685 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7686 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7687 workflowtemplate step id 290 workflowtemplate step id 259 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Selected workflows ids: 7628 Selected workflows ids: 7679 Selected workflows ids: 7685 Selected workflows ids: 7686 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7628 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7679 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7685 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7686 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7628 Selected workflows ids: 7685 Selected workflows ids: 7686 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7628 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7685 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7686 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7628 Selected workflows ids: 7685 Selected workflows ids: 7686 Selected workflows ids: 7687 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7628 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7685 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7686 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7687 workflowtemplate step id 290 workflowtemplate step id 259 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7628 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7685 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7686 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7687 workflowtemplate step id 290 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37036.pdf bfabricUpload Execution halted