Listening on http://127.0.0.1:38229 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user nbionda Bfabric query: workflow containerid = 37143 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7673 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7673 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7673 Selected workflows ids: 7678 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7673 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7678 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7673 Selected workflows ids: 7678 Selected workflows ids: 7698 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7673 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7678 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7698 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 7673 Selected workflows ids: 7678 Selected workflows ids: 7698 Selected workflows ids: 7709 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7673 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7678 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7698 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7709 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7673 workflowtemplate step id 230 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7678 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7698 workflowtemplate step id 247 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7709 workflowtemplate step id 256 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37143.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user nbionda Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37070 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7674 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7674 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7674 Selected workflows ids: 7677 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7674 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7677 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7674 Selected workflows ids: 7677 Selected workflows ids: 7699 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7674 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7677 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7699 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7674 Selected workflows ids: 7677 Selected workflows ids: 7699 Selected workflows ids: 7710 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7674 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7677 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7699 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7710 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7674 workflowtemplate step id 230 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7677 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7699 workflowtemplate step id 247 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7710 workflowtemplate step id 256 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37070.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7674 workflowtemplate step id 230 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7677 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7699 workflowtemplate step id 247 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7710 workflowtemplate step id 256 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37070.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user cfortes Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37157 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7728 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7728 workflowtemplate step id 226 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... Selected workflows ids: 7728 Selected workflows ids: 7732 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7728 workflowtemplate step id 226 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7732 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7728 Selected workflows ids: 7732 Selected workflows ids: 7736 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7728 workflowtemplate step id 226 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7732 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7736 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 7728 Selected workflows ids: 7732 Selected workflows ids: 7736 Selected workflows ids: 7737 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7728 workflowtemplate step id 226 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7732 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7736 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7737 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7728 workflowtemplate step id 226 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7732 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7736 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7737 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37157.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid In function read_templatefile In function read_templatefile In function read_templatefile In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user wuethrich Bfabric query: workflow containerid = 37121 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 308 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 228 workflowtemplate step id 227 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 240 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 232 workflowtemplate step id 231 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 290 workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7664 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7664 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7664 Selected workflows ids: 7665 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7664 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7665 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7664 Selected workflows ids: 7665 Selected workflows ids: 7738 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7664 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7665 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7738 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 7664 Selected workflows ids: 7665 Selected workflows ids: 7738 Selected workflows ids: 7739 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7664 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7665 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7738 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7739 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7664 workflowtemplate step id 239 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7665 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7738 workflowtemplate step id 291 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7739 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37121.pdf bfabricUpload Execution halted