Listening on http://127.0.0.1:34753 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid In function read_templatefile In function read_templatefile In function read_workflowid In function read_templatefile In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user nbionda Bfabric query: workflow containerid = 37174 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 274 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 271 workflowtemplate step id 227 workflowtemplate step id 240 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 241 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 274 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 271 workflowtemplate step id 227 workflowtemplate step id 240 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 241 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 274 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 271 workflowtemplate step id 227 workflowtemplate step id 240 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 241 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 274 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 271 workflowtemplate step id 227 workflowtemplate step id 240 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 241 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 231 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules Selected workflows ids: 7714 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... Selected workflows ids: 7714 Selected workflows ids: 7725 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7714 Selected workflows ids: 7725 Selected workflows ids: 7765 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7765 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7714 Selected workflows ids: 7725 Selected workflows ids: 7765 Selected workflows ids: 7767 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7765 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7765 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37174.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7765 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37174.pdf In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid In function read_templatefile In function read_templatefile In function read_templatefile In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_templatefile In function read_workflowid In function read_templatefile In function read_workflowid Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_templatefile In function read_workflowid In function read_templatefile In function read_workflowid Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_templatefile In function read_templatefile In function read_templatefile In function read_templatefile In function read_workflowid In function read_templatefile In function read_workflowid Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_templatefile In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_templatefile In function read_templatefile generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 169: append 168: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 152: read_steptemplateid(input$workflowids[[x]]) 150: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#278] 149: lapply 148: eventReactiveValueFunc [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#278] 104: report 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#343] 96: func 83: renderFunc 82: output$downloadReportButton 1: runApp In function read_workflowid In function read_templatefile In function read_workflowid Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_templatefile In function read_templatefile In function read_templatefile In function read_templatefile In function read_templatefile In function read_templatefile In function read_templatefile In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_templatefile In function read_templatefile In function read_templatefile In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user nbionda Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37174 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 274 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 271 workflowtemplate step id 227 workflowtemplate step id 240 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 241 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 274 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 271 workflowtemplate step id 227 workflowtemplate step id 240 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 241 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 274 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 271 workflowtemplate step id 227 workflowtemplate step id 240 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 241 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 274 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 271 workflowtemplate step id 227 workflowtemplate step id 240 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 241 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7714 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7714 Selected workflows ids: 7725 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7714 Selected workflows ids: 7725 Selected workflows ids: 7765 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7765 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 7714 Selected workflows ids: 7725 Selected workflows ids: 7765 Selected workflows ids: 7767 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7765 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7765 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37174.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user nbionda Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37172 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 274 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 271 workflowtemplate step id 227 workflowtemplate step id 240 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 241 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 274 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 271 workflowtemplate step id 227 workflowtemplate step id 240 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 241 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 274 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 271 workflowtemplate step id 227 workflowtemplate step id 240 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 241 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 274 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 226 workflowtemplate step id 271 workflowtemplate step id 227 workflowtemplate step id 240 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 241 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 272 workflowtemplate step id 243 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 225 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 228 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 226 workflowtemplate step id 266 workflowtemplate step id 243 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7741 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7741 workflowtemplate step id 239 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7741 Selected workflows ids: 7751 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7741 workflowtemplate step id 239 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7751 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: 7741 Selected workflows ids: 7751 Selected workflows ids: 7764 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7741 workflowtemplate step id 239 workflowtemplate step id 225 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7751 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7764 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7741 workflowtemplate step id 239 workflowtemplate step id 225 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7751 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7764 workflowtemplate step id 254 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37172.pdf bfabricUpload Execution halted