Listening on http://127.0.0.1:34489 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user wuethrich Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 371 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 3717 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37175 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 231 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 307 workflowtemplate step id 244 workflowtemplate step id 236 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 241 workflowtemplate step id 273 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 231 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 307 workflowtemplate step id 244 workflowtemplate step id 236 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 241 workflowtemplate step id 273 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 231 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 307 workflowtemplate step id 244 workflowtemplate step id 236 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 241 workflowtemplate step id 273 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 231 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 307 workflowtemplate step id 244 workflowtemplate step id 236 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 241 workflowtemplate step id 273 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7755 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7755 workflowtemplate step id 271 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation saving 'login and webservicepassword' ... Selected workflows ids: 7755 Selected workflows ids: 7756 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7755 workflowtemplate step id 271 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7756 workflowtemplate step id 226 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7755 Selected workflows ids: 7756 Selected workflows ids: 7757 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7755 workflowtemplate step id 271 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7756 workflowtemplate step id 226 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7757 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7755 Selected workflows ids: 7756 Selected workflows ids: 7757 Selected workflows ids: 7789 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7755 workflowtemplate step id 271 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7756 workflowtemplate step id 226 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7757 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7789 workflowtemplate step id 250 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 7755 Selected workflows ids: 7756 Selected workflows ids: 7757 Selected workflows ids: 7789 Selected workflows ids: 7805 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7755 workflowtemplate step id 271 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7756 workflowtemplate step id 226 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7757 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7789 workflowtemplate step id 250 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7805 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_templatefile In function read_workflowid Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 138: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 137: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile In function read_workflowid Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 138: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 137: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile In function read_workflowid Bfabric query: workflow containerid = 372 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 138: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 137: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile In function read_workflowid Bfabric query: workflow containerid = 3728 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 138: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 137: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile In function read_workflowid Bfabric query: workflow containerid = 37280 Bfabric query: dataset id Selected workflows ids: 7755 Selected workflows ids: 7756 Selected workflows ids: 7757 Selected workflows ids: 7789 Selected workflows ids: 7805 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7755 workflowtemplate step id 271 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7756 workflowtemplate step id 226 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7757 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7789 workflowtemplate step id 250 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7805 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 231 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 307 workflowtemplate step id 244 workflowtemplate step id 236 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 241 workflowtemplate step id 273 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 231 workflowtemplate step id 228 workflowtemplate step id 254 workflowtemplate step id 248 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 266 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 239 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 307 workflowtemplate step id 244 workflowtemplate step id 236 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 254 workflowtemplate step id 250 workflowtemplate step id 254 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 272 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 266 workflowtemplate step id 266 workflowtemplate step id 231 workflowtemplate step id 231 workflowtemplate step id 254 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 241 workflowtemplate step id 273 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7817 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7817 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7817 Selected workflows ids: 7818 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7817 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7818 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7817 Selected workflows ids: 7818 Selected workflows ids: 7826 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7817 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7818 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7826 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7817 Selected workflows ids: 7818 Selected workflows ids: 7826 Selected workflows ids: 7833 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7817 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7818 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7826 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7833 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7817 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7818 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7826 workflowtemplate step id 247 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7833 workflowtemplate step id 256 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37280.pdf bfabricUpload Execution halted