Listening on http://127.0.0.1:33661 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user roschi Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 369 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 36916 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user roschi Bfabric query: workflow containerid = 36916 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7692 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7692 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7692 Selected workflows ids: 7742 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7692 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7742 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7692 Selected workflows ids: 7742 Selected workflows ids: 7763 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7692 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7742 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7763 workflowtemplate step id 249 workflowtemplate step id 274 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 7692 Selected workflows ids: 7742 Selected workflows ids: 7763 Selected workflows ids: 7861 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7692 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7742 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7763 workflowtemplate step id 249 workflowtemplate step id 274 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7861 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7692 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7742 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7763 workflowtemplate step id 249 workflowtemplate step id 274 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7861 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-36916.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user schesnov Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37300 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 248 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7853 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7853 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7853 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 processing file: report.Rmd output file: report.knit.md ! LaTeX Error: There's no line here to end. Warning: Error in : LaTeX failed to compile /tmp/Rtmp6oh0tV/fgcz_order_report-37300.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See fgcz_order_report-37300.log for more info. 157: stop 156: show_latex_error 155: on_error 153: run_engine 152: latexmk_emu 151: tinytex::latexmk 150: latexmk 149: rmarkdown::render 148: eventReactiveValueFunc [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#330] 104: report 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#343] 96: func 83: renderFunc 82: output$downloadReportButton 1: runApp generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7853 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37300.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7853 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37300.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user schesnov Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 3732 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37327 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules Selected workflows ids: 7862 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7862 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7862 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37327.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user schesnov Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37335 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7864 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7864 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7864 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37335.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37313 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7841 Selected workflows ids: 7842 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid In function read_templatefile In function read_workflowid In function read_templatefile In function read_workflowid Request started from user nbionda Bfabric query: workflow containerid = 37313 In function read_templatefile Bfabric query: dataset id Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7841 Selected workflows ids: 7842 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37313 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7841 Selected workflows ids: 7842 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. In function read_templatefile In function read_workflowid Request started from user nbionda Bfabric query: workflow containerid = 37313 In function read_templatefile Bfabric query: dataset id Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7841 Selected workflows ids: 7842 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user spfammatter Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37313 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7841 Selected workflows ids: 7842 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user nbionda Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 373 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37313 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7841 Selected workflows ids: 7842 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user nbionda Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37313 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7841 Selected workflows ids: 7842 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 Selected workflows ids: 7842 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7841 Selected workflows ids: 7842 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 Selected workflows ids: 7842 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7841 Selected workflows ids: 7842 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user nbionda Bfabric query: workflow containerid = 37313 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7841 Selected workflows ids: 7842 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user nbionda Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37222 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7845 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7845 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7845 Selected workflows ids: 7851 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7845 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7851 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7845 Selected workflows ids: 7851 Selected workflows ids: 7858 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7845 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7851 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7858 workflowtemplate step id 250 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7845 Selected workflows ids: 7851 Selected workflows ids: 7858 Selected workflows ids: 7859 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7845 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7851 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7858 workflowtemplate step id 250 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7859 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user nbionda Bfabric query: workflow containerid = 37313 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7841 Selected workflows ids: 7842 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 118: append 117: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#189] 101: read_steptemplateid(L[[i]]) 99: FUN [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#224] 98: lapply 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#222] 96: func 83: renderFunc 82: output$textTemplate 1: runApp saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37313.pdf In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user nbionda Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37313 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7841 Selected workflows ids: 7842 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7841 Selected workflows ids: 7842 Selected workflows ids: 7855 Selected workflows ids: 7868 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7841 workflowtemplate step id 230 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7842 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7855 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7868 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37313.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user cfortes Bfabric query: workflow containerid = 37277 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 226 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 245 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 266 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7811 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7811 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7811 Selected workflows ids: 7825 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7811 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7825 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7811 Selected workflows ids: 7825 Selected workflows ids: 7872 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7811 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7825 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7872 workflowtemplate step id 250 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7811 Selected workflows ids: 7825 Selected workflows ids: 7872 Selected workflows ids: 7873 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7811 workflowtemplate step id 239 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7825 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7872 workflowtemplate step id 250 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7873 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7811 workflowtemplate step id 239 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7825 workflowtemplate step id 245 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7872 workflowtemplate step id 250 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7873 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37277.pdf generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7811 workflowtemplate step id 239 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7825 workflowtemplate step id 245 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7872 workflowtemplate step id 250 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7873 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37277.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37328 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 245 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7860 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7860 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7860 Selected workflows ids: 7865 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7860 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7865 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7860 Selected workflows ids: 7865 Selected workflows ids: 7874 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7860 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7865 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7874 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7860 Selected workflows ids: 7865 Selected workflows ids: 7874 Selected workflows ids: 7883 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7860 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7865 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7874 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7883 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7860 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 231 workflowtemplate step id 239 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7865 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7874 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7883 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37328.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user schesnov Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37311 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7878 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7878 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7878 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37311.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user chiawei Bfabric query: workflow containerid = 37325 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 257 workflowtemplate step id 230 workflowtemplate step id 257 workflowtemplate step id 244 workflowtemplate step id 230 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 272 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 279 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7863 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7863 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: 7863 Selected workflows ids: 7854 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7863 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7854 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7863 Selected workflows ids: 7854 Selected workflows ids: 7880 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7863 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7854 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7880 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7863 Selected workflows ids: 7854 Selected workflows ids: 7880 Selected workflows ids: 7884 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7863 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7854 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7880 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7884 workflowtemplate step id 260 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Selected workflows ids: 7854 Selected workflows ids: 7880 Selected workflows ids: 7884 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7854 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7880 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7884 workflowtemplate step id 260 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7854 Selected workflows ids: 7884 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7854 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7884 workflowtemplate step id 260 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7854 Selected workflows ids: 7863 Selected workflows ids: 7884 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7854 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7863 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7884 workflowtemplate step id 260 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7854 Selected workflows ids: 7863 Selected workflows ids: 7880 Selected workflows ids: 7884 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7854 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7863 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7880 workflowtemplate step id 291 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7884 workflowtemplate step id 260 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7854 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7863 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7880 workflowtemplate step id 291 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7884 workflowtemplate step id 260 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37325.pdf bfabricUpload bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7854 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7863 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7880 workflowtemplate step id 291 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7884 workflowtemplate step id 260 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37325.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user nbionda Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37174 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules Selected workflows ids: 7767 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7767 Selected workflows ids: 7866 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = 7866 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7767 Selected workflows ids: 7866 Selected workflows ids: 7867 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = 7866 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7867 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... Selected workflows ids: 7767 Selected workflows ids: 7866 Selected workflows ids: 7867 Selected workflows ids: 7714 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = 7866 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7867 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7767 Selected workflows ids: 7866 Selected workflows ids: 7867 Selected workflows ids: 7714 Selected workflows ids: 7725 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = 7866 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7867 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7767 Selected workflows ids: 7866 Selected workflows ids: 7867 Selected workflows ids: 7714 Selected workflows ids: 7725 Selected workflows ids: 7765 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = 7866 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7867 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7765 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis saving 'login and webservicepassword' ... Selected workflows ids: 7767 Selected workflows ids: 7866 Selected workflows ids: 7867 Selected workflows ids: 7714 Selected workflows ids: 7725 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = 7866 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7867 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7767 Selected workflows ids: 7866 Selected workflows ids: 7867 Selected workflows ids: 7714 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = 7866 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7867 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7767 Selected workflows ids: 7866 Selected workflows ids: 7867 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = 7866 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7867 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7767 Selected workflows ids: 7866 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = 7866 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7767 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules Selected workflows ids: 7714 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7714 Selected workflows ids: 7725 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7714 Selected workflows ids: 7725 Selected workflows ids: 7765 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7765 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7714 Selected workflows ids: 7725 Selected workflows ids: 7765 Selected workflows ids: 7767 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7765 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7714 Selected workflows ids: 7725 Selected workflows ids: 7765 Selected workflows ids: 7767 Selected workflows ids: 7866 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7765 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = 7866 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7714 Selected workflows ids: 7725 Selected workflows ids: 7765 Selected workflows ids: 7767 Selected workflows ids: 7866 Selected workflows ids: 7867 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7714 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7725 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7765 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7767 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = 7866 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7867 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user schesnov Bfabric query: workflow containerid = 37355 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 224 workflowtemplate step id 232 workflowtemplate step id 239 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules Selected workflows ids: 7897 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7897 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 61 workflowtemplate name: Analysis procedure: Purified Biomolecules saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7897 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37355.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user wuethrich Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 372 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 3729 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37290 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 261 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 261 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 261 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 261 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 workflowtemplate step id 256 workflowtemplate step id 243 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7898 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7898 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7898 Selected workflows ids: 7899 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7898 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7899 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7898 Selected workflows ids: 7899 Selected workflows ids: 7900 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7898 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7899 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7900 workflowtemplate step id 250 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7898 Selected workflows ids: 7899 Selected workflows ids: 7900 Selected workflows ids: 7901 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7898 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7899 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7900 workflowtemplate step id 250 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7901 workflowtemplate step id 261 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7898 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7899 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7900 workflowtemplate step id 250 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7901 workflowtemplate step id 261 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37290.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user wuethrich Bfabric query: workflow containerid = 3 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 373 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37310 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 261 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 261 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 261 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 261 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 244 workflowtemplate step id 272 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7890 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7890 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7890 Selected workflows ids: 7891 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7890 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7891 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition Selected workflows ids: 7890 Selected workflows ids: 7891 Selected workflows ids: 7894 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7890 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7891 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7894 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7890 Selected workflows ids: 7891 Selected workflows ids: 7894 Selected workflows ids: 7896 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7890 workflowtemplate step id 231 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7891 workflowtemplate step id 244 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7894 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7896 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7890 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7891 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7894 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7896 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37310.pdf bfabricUpload generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7890 workflowtemplate step id 231 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7891 workflowtemplate step id 244 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7894 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7896 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37310.pdf bfabricUpload In function read_workflowid Error in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : isFALSE(is.null(login)) is not TRUE Error in ``(...) : object 'u' not found In function read_templatefile saving 'login and webservicepassword' ... In function read_workflowid read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user lkunz Bfabric query: workflow containerid = 37 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#125] 104: read_workflowid 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#135] 96: func 83: renderFunc 82: output$workflow 1: runApp In function read_templatefile Warning: Error in $: $ operator is invalid for atomic vectors 123: 122: stop 121: read_workflowid 114: [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#89] 98: read_templatefile 97: renderUI [/usr/local/lib/R/site-library/oreport/shiny/order_report/server.R#216] 96: func 83: renderFunc 82: output$textTemplate 1: runApp In function read_workflowid Bfabric query: workflow containerid = 37307 In function read_templatefile Bfabric query: dataset id Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 261 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 261 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... Selected workflows ids: In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 261 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results In function read_steptemplateid Bfabric query: workflowstep workflowid = workflowtemplate step id 259 workflowtemplate step id 254 workflowtemplate step id 230 workflowtemplate step id 254 workflowtemplate step id 254 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 261 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 241 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 254 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 260 workflowtemplate step id 256 workflowtemplate step id 291 workflowtemplate step id 256 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 248 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 256 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 301 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 247 workflowtemplate step id 266 workflowtemplate step id 239 workflowtemplate step id 247 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 256 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 248 workflowtemplate step id 272 workflowtemplate step id 244 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 244 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 244 workflowtemplate step id 239 workflowtemplate step id 240 workflowtemplate step id 277 workflowtemplate step id 276 workflowtemplate step id 275 workflowtemplate step id 256 workflowtemplate step id 249 workflowtemplate step id 247 workflowtemplate step id 239 workflowtemplate step id 231 workflowtemplate step id 239 workflowtemplate step id 256 workflowtemplate step id 250 workflowtemplate step id 225 workflowtemplate step id 243 workflowtemplate step id 272 workflowtemplate step id 231 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 workflowtemplate step id 289 workflowtemplate step id 277 workflowtemplate step id 280 workflowtemplate step id 275 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results Selected workflows ids: 7850 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7850 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation Selected workflows ids: 7850 Selected workflows ids: 7875 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7850 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7875 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Selected workflows ids: 7850 Selected workflows ids: 7875 Selected workflows ids: 7902 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7850 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7875 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7902 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis Selected workflows ids: 7850 Selected workflows ids: 7875 Selected workflows ids: 7902 Selected workflows ids: 7904 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7850 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 57 workflowtemplate name: Proteomics Sample Preparation In function read_steptemplateid Bfabric query: workflowstep workflowid = 7875 workflowtemplate step id 266 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 58 workflowtemplate name: Proteomics Data acquisition In function read_steptemplateid Bfabric query: workflowstep workflowid = 7902 workflowtemplate step id 254 workflowtemplate step id 254 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 59 workflowtemplate name: Proteomics Data analysis In function read_steptemplateid Bfabric query: workflowstep workflowid = 7904 workflowtemplate step id 259 In function read_workflowtemplate Bfabric query: workflowtemplate workflowtemplateid = 60 workflowtemplate name: Proteomics Results saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... generateReport In function read_steptemplateid Bfabric query: workflowstep workflowid = 7850 workflowtemplate step id 239 workflowtemplate step id 225 workflowtemplate step id 239 workflowtemplate step id 232 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7875 workflowtemplate step id 266 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7902 workflowtemplate step id 254 workflowtemplate step id 254 In function read_steptemplateid Bfabric query: workflowstep workflowid = 7904 workflowtemplate step id 259 processing file: report.Rmd output file: report.knit.md Output created: fgcz_order_report-37307.pdf bfabricUpload Execution halted