Listening on http://127.0.0.1:33321

Attaching package: 'DT'

The following objects are masked from 'package:shiny':

    dataTableOutput, renderDataTable

New names:
• `MOLECULAR_FORMULA` -> `MOLECULAR_FORMULA...12`
• `MONOISOTOPIC_MASS` -> `MONOISOTOPIC_MASS...13`
• `DTXSID` -> `DTXSID...16`
• `DTXSID` -> `DTXSID...17`
• `MOLECULAR_FORMULA` -> `MOLECULAR_FORMULA...24`
• `MONOISOTOPIC_MASS` -> `MONOISOTOPIC_MASS...25`
Rows: 54 Columns: 28
── Column specification ──────────────────────────────────────────────
Delimiter: ","
chr (24): Compound, Vial nr, Group, Experiment, conc (1mg/L), solv...
dbl  (4): Cluster number, m/z, MONOISOTOPIC_MASS...13, MONOISOTOPI...

ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
getCompound
GETDATA BEGIN
Warning: Error in gzfile: invalid 'description' argument
  138: gzfile
  137: load
  136: .gd [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#68]
  134: <reactive:getData> [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#123]
  118: getData
  117: <reactive:getCompound> [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#240]
  101: getCompound
   97: renderUI [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#247]
   96: func
   83: renderFunc
   82: output$selectCompound
    1: runApp
Warning: Error in gzfile: invalid 'description' argument
  205: <Anonymous>
  204: stop
  203: getData
  202: <reactive:getFilteredData> [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#145]
  200: .func
  197: contextFunc
  196: env$runWith
  189: ctx$run
  188: self$.updateValue
  186: getFilteredData
  185: <reactive:getFilteredScoreTable> [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#349]
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getFilteredScoreTable
  168: renderPlot [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#381]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$scorePlot
    1: runApp
Warning: Error in gzfile: invalid 'description' argument
  189: <Anonymous>
  188: stop
  187: getFilteredData
  185: <reactive:getAggregatedData> [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#208]
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getAggregatedData
  168: renderPlot [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#519]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$stackedBarChartIonType
    1: runApp
Warning: Error in gzfile: invalid 'description' argument
  188: <Anonymous>
  187: stop
  186: getAggregatedData
  185: <reactive:plotStackedBarChart> [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#545]
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: plotStackedBarChart
  168: renderPlot [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#572]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$stackedBarChart
    1: runApp
Warning: Error in gzfile: invalid 'description' argument
  174: <Anonymous>
  173: stop
  172: getFilteredData
  168: renderPlot [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#639]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$bwplot
    1: runApp
Warning: Error in gzfile: invalid 'description' argument
  172: <Anonymous>
  171: stop
  170: getData
  168: renderPlot [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#653]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$top3
    1: runApp
getCompound
GETDATA BEGIN
3506734
2-Amino-3-nitrobenzoic acid2-​Hydroxy-​5-​nitrobenzoic acid2-Methoxy-4-nitrophenol2-methoxy-4,6-dinitrophenol2-Methyl-4-nitrophenol2,4-Dinitrophenol3-nitroindole3-Nitrophenol3,5-Dinitrosalicylic acid4-Chlorobenzoic acid4-Hydroxy-3-nitrobenzenesulfonic acid4-Hydroxy-3-nitrobenzoic acid4-Nitroanthranilic acid4-nitrobenzenesulfonic acid4-Nitrophenol4-Nitrophthalic acid5-Nitroisophthalic acid5-NitrovanillinAflatoxin B2BenzocaineBenzoic acid, 2-hydroxy-4-nitro-DinoterbEpoxiconazoleFenofibric acidFlubendazoleGemfibrozilIbuprofenImipenem JWH-250 MCPAN-Desmethyl ClarithromycinNitrofurazonePhenethylaminePiperacillinSucraloseTriadimenol
positive mode
Warning: Error in aggregate.data.frame: no rows to aggregate
  189: stop
  188: aggregate.data.frame
  187: aggregate.formula
  185: <reactive:getFilteredScoreTable> [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#353]
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getFilteredScoreTable
  168: renderPlot [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#381]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$scorePlot
    1: runApp
Warning: Error in if: argument is of length zero
  168: renderPlot [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#524]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$stackedBarChartIonType
    1: runApp
Warning: Error in if: argument is of length zero
  185: <reactive:plotStackedBarChart> [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#550]
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: plotStackedBarChart
  168: renderPlot [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#572]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$stackedBarChart
    1: runApp
Warning: Error in limits.and.aspect: need at least one panel
  172: stop
  171: limits.and.aspect
  170: xyplot.formula
  168: renderPlot [/usr/local/lib/R/site-library/uvpd/shiny/stackedbarchart/server.R#656]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$top3
    1: runApp
positive mode
positive mode


Execution halted