Listening on http://127.0.0.1:44225 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: base64enc Loading required package: jsonlite Attaching package: 'jsonlite' The following object is masked from 'package:shiny': validate Loading required package: httr Loading required package: DT Attaching package: 'DT' The following objects are masked from 'package:shiny': dataTableOutput, renderDataTable Loading required package: dplyr Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Loading required package: XML System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpk9lVdH/fileb20d723ab3ca8.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 33383 DEBUG: wuid= DEBUG: rv wuid=295762 DEBUG: wuid=295762 debug output$download values$wuid=295762 debug output$download values$wuid=295762 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, download, generate, lcSystem debug output$download values$wuid=295762 debug output$download values$wuid=295762 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, download, generate, lcSystem debug output$download values$wuid=295762 debug output$download values$wuid=295762 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpk9lVdH/fileb20d773e98a56.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33176 debug output$download values$wuid=295764 debug output$download values$wuid=295764 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 Warning: Error in if: missing value where TRUE/FALSE needed 127: .autoQC 126: .clean 125: generate_queue 124: bfabricShiny:::generate_queue_order 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#387] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#571] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpk9lVdH/fileb20d7174bbd48.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33324 debug output$download values$wuid=295769 debug output$download values$wuid=295769