Listening on http://127.0.0.1:41331 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: base64enc Loading required package: jsonlite Attaching package: 'jsonlite' The following object is masked from 'package:shiny': validate Loading required package: httr Loading required package: DT Attaching package: 'DT' The following objects are masked from 'package:shiny': dataTableOutput, renderDataTable Loading required package: dplyr Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Loading required package: XML System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/RtmpMpl6wA/file2d8bfc129e3d69.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33171 debug output$download values$wuid=295923 debug output$download values$wuid=295923 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#316] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/RtmpMpl6wA/file2d8bfc6d38ee44.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33171 debug output$download values$wuid=295927 debug output$download values$wuid=295927 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#316] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/RtmpMpl6wA/file2d8bfc7cb06862.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 30646 debug output$download values$wuid=295951 debug output$download values$wuid=295951 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/RtmpMpl6wA/file2d8bfc2b791ed.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 3000 debug output$download values$wuid=296015 debug output$download values$wuid=296015 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/RtmpMpl6wA/file2d8bfc6b01fd8f.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 3530 debug output$download values$wuid=296061 debug output$download values$wuid=296061 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#316] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/RtmpMpl6wA/file2d8bfc618b49e2.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 33410 DEBUG: wuid= DEBUG: rv wuid=296065 DEBUG: wuid=296065 debug output$download values$wuid=296065 debug output$download values$wuid=296065 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, download, generate, lcSystem debug output$download values$wuid=296065 debug output$download values$wuid=296065 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem Warning: Error in .mapPlatePositionEVOSEP: more samples than plate positions! 131: stop 130: .mapPlatePositionEVOSEP 129: nrow 125: .formatHyStar 124: %>% 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#475] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in .mapPlatePositionEVOSEP: more samples than plate positions! 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#571] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem Warning: Error in .mapPlatePositionEVOSEP: more samples than plate positions! 131: stop 130: .mapPlatePositionEVOSEP 129: nrow 125: .formatHyStar 124: %>% 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#475] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in .mapPlatePositionEVOSEP: more samples than plate positions! 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#571] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/RtmpMpl6wA/file2d8bfc69a7cde9.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 33281 DEBUG: wuid= DEBUG: rv wuid=296071 DEBUG: wuid=296071 debug output$download values$wuid=296071 debug output$download values$wuid=296071 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, download, generate, lcSystem debug output$download values$wuid=296071 debug output$download values$wuid=296071 System configuration: Proteomics XCalibur EVOSEP1x12x8 Warning: Error in data.frame: arguments imply differing number of rows: 1, 0 129: stop 128: data.frame 127: .autoQC 126: .autoQC01 125: generate_queue 124: bfabricShiny:::generate_queue_order 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#387] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in data.frame: arguments imply differing number of rows: 1, 0 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#571] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=296071 debug output$download values$wuid=296071 System configuration: Proteomics HyStar M-CLASS48_48 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, download, generate, lcSystem Warning: Error in .mapPlatePositionNanoElute: more samples than plate positions! 135: stop 134: .mapPlatePositionNanoElute 133: .insertStandardsNanoElute 132: .insertStandardsNanoElute 131: .insertStandardsNanoElute 130: .insertStandardsNanoElute 129: nrow 125: .formatHyStar 124: %>% 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#512] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in .mapPlatePositionNanoElute: more samples than plate positions! 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#571] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics HyStar nanoElute54_54 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, download, generate, lcSystem Warning: Error in .mapPlatePositionNanoElute: more samples than plate positions! 135: stop 134: .mapPlatePositionNanoElute 133: .insertStandardsNanoElute 132: .insertStandardsNanoElute 131: .insertStandardsNanoElute 130: .insertStandardsNanoElute 129: nrow 125: .formatHyStar 124: %>% 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#512] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in .mapPlatePositionNanoElute: more samples than plate positions! 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#571] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, download, generate, lcSystem debug output$download values$wuid=296071 debug output$download values$wuid=296071 System configuration: Proteomics XCalibur EVOSEP1x12x8 Warning: Error in data.frame: arguments imply differing number of rows: 1, 0 129: stop 128: data.frame 127: .autoQC 126: .autoQC01 125: generate_queue 124: bfabricShiny:::generate_queue_order 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#387] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in data.frame: arguments imply differing number of rows: 1, 0 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#571] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=296071 debug output$download values$wuid=296071 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/RtmpMpl6wA/file2d8bfc335ec922.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33281 debug output$download values$wuid=296072 debug output$download values$wuid=296072 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: The select input "sample" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. Warning: The select input "login" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#316] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: The select input "sample" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. Warning: The select input "login" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#316] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 Warning: Error in if: missing value where TRUE/FALSE needed 127: .autoQC 126: .autoQC01 125: generate_queue 124: bfabricShiny:::generate_queue_order 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#387] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#571] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 Warning: Error in if: missing value where TRUE/FALSE needed 127: .autoQC 126: .autoQC01 125: generate_queue 124: bfabricShiny:::generate_queue_order 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#387] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#571] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 Warning: Error in if: missing value where TRUE/FALSE needed 127: .autoQC 126: .clean 125: generate_queue 124: bfabricShiny:::generate_queue_order 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#387] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#571] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/RtmpMpl6wA/file2d8bfc34bae5c3.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 27367 debug output$download values$wuid=296077 debug output$download values$wuid=296077 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: The select input "sample" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. Warning: The select input "login" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#316] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/RtmpMpl6wA/file2d8bfc32d4df13.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33423 containerid = 33399 debug output$download values$wuid=296118 debug output$download values$wuid=296118 Composing XCalibur MS configuration file /tmp/RtmpMpl6wA/file2d8bfc21fd61b7.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33423 containerid = 33399 debug output$download values$wuid=296120 debug output$download values$wuid=296120 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#316] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/RtmpMpl6wA/file2d8bfc76a128b5.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33078 debug output$download values$wuid=296140 debug output$download values$wuid=296140 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/RtmpMpl6wA/file2d8bfc1cd7a4ae.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 33348 DEBUG: wuid= DEBUG: rv wuid=296144 DEBUG: wuid=296144 debug output$download values$wuid=296144 debug output$download values$wuid=296144 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, download, generate, lcSystem debug output$download values$wuid=296144 debug output$download values$wuid=296144 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, download, generate, lcSystem debug output$download values$wuid=296144 debug output$download values$wuid=296144 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, generate, lcSystem debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/RtmpMpl6wA/file2d8bfc59793189.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 33348 DEBUG: wuid= DEBUG: rv wuid=296145 DEBUG: wuid=296145 debug output$download values$wuid=296145 debug output$download values$wuid=296145 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, instrument, method, instrumentControlSoftware, area, folder, testmethods, replicates, download, generate, lcSystem debug output$download values$wuid=296145 debug output$download values$wuid=296145