Listening on http://127.0.0.1:37959 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: base64enc Loading required package: jsonlite Attaching package: 'jsonlite' The following object is masked from 'package:shiny': validate Loading required package: httr Loading required package: DT Attaching package: 'DT' The following objects are masked from 'package:shiny': dataTableOutput, renderDataTable Loading required package: dplyr Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Loading required package: XML System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpj7d3bm/file16627153a2d41b.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33634 containerid = 33654 debug output$download values$wuid=297347 debug output$download values$wuid=297347 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpj7d3bm/file16627147ead89d.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 33584 DEBUG: wuid= DEBUG: rv wuid=297350 DEBUG: wuid=297350 debug output$download values$wuid=297350 debug output$download values$wuid=297350 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297350 debug output$download values$wuid=297350 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpj7d3bm/file16627146c45265.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 32853 DEBUG: wuid= DEBUG: rv wuid=297388 DEBUG: wuid=297388 debug output$download values$wuid=297388 debug output$download values$wuid=297388 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297388 debug output$download values$wuid=297388 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument Warning in max(table(S[, names(S) == x])) : no non-missing arguments to max; returning -Inf Warning: Error in :: result would be too long a vector 127: lapply 125: .blockRandom 124: %>% 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#480] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in :: result would be too long a vector 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#582] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument Warning in max(table(S[, names(S) == x])) : no non-missing arguments to max; returning -Inf Warning: Error in :: result would be too long a vector 127: lapply 125: .blockRandom 124: %>% 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#480] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in :: result would be too long a vector 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#582] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid=297388 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297388 debug output$download values$wuid=297388 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297388 debug output$download values$wuid=297388 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297388 debug output$download values$wuid=297388 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297388 debug output$download values$wuid=297388 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297388 debug output$download values$wuid=297388 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpj7d3bm/file16627117a0648b.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 33568 DEBUG: wuid= DEBUG: rv wuid=297390 DEBUG: wuid=297390 debug output$download values$wuid=297390 debug output$download values$wuid=297390 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297390 debug output$download values$wuid=297390 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpj7d3bm/file166271107574cb.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33386 debug output$download values$wuid=297394 debug output$download values$wuid=297394 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpj7d3bm/file1662717b442a05.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 33383 DEBUG: wuid= DEBUG: rv wuid=297445 DEBUG: wuid=297445 debug output$download values$wuid=297445 debug output$download values$wuid=297445 Composing HyStar XML MS configuration file /tmp/Rtmpj7d3bm/file166271701423dd.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 33383 DEBUG: wuid=297445 DEBUG: rv wuid=297446 DEBUG: wuid=297446 debug output$download values$wuid=297446 debug output$download values$wuid=297446 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297446 debug output$download values$wuid=297446 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpj7d3bm/file166271415b8d15.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33648 debug output$download values$wuid=297448 debug output$download values$wuid=297448 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpj7d3bm/file1662711338d2fc.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 32882 debug output$download values$wuid=297452 debug output$download values$wuid=297452 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpj7d3bm/file1662717cbdb236.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33648 debug output$download values$wuid=297453 debug output$download values$wuid=297453 Composing XCalibur MS configuration file /tmp/Rtmpj7d3bm/file166271607a7d1.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33595 debug output$download values$wuid=297455 debug output$download values$wuid=297455 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: The select input "sample" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. Warning: The select input "login" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. Warning: Error in strsplit: non-character argument 115: strsplit 114: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#289] 98: getSample 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#320] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in strsplit: non-character argument 115: strsplit 114: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#289] 98: getSample 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#320] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 Warning: Error in <-: incorrect number of subscripts on matrix 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#376] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in <-: incorrect number of subscripts on matrix 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#582] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 Warning: Error in [[: subscript out of bounds 127: 126: .generate_template_base 125: generate_queue 124: bfabricShiny:::generate_queue_order 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#397] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in [[: subscript out of bounds 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#582] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpj7d3bm/file16627175d99215.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33575 debug output$download values$wuid=297458 debug output$download values$wuid=297458 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: The select input "sample" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. Warning: The select input "login" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpj7d3bm/file1662712279fd90.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33676 debug output$download values$wuid=297478 debug output$download values$wuid=297478 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpj7d3bm/file1662711e860870.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33658 debug output$download values$wuid=297479 debug output$download values$wuid=297479 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpj7d3bm/file1662713e5c32eb.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33591 debug output$download values$wuid=297496 debug output$download values$wuid=297496 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpj7d3bm/file166271e5540a.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33665 debug output$download values$wuid=297499 debug output$download values$wuid=297499 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpj7d3bm/file1662716aa88674.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 33669 debug output$download values$wuid=297502 debug output$download values$wuid=297502 System configuration: Proteomics HyStar M-CLASS48_48 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297502 debug output$download values$wuid=297502 System configuration: Proteomics HyStar nanoElute54_54 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297502 debug output$download values$wuid=297502 System configuration: Proteomics HyStar nanoElute54_54 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument Warning in max(table(S[, names(S) == x])) : no non-missing arguments to max; returning -Inf Warning: Error in :: result would be too long a vector 127: lapply 125: .blockRandom 124: %>% 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#480] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in :: result would be too long a vector 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#582] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid=297502 System configuration: Proteomics HyStar nanoElute54_54 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297502 debug output$download values$wuid=297502 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297502 debug output$download values$wuid=297502 Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 Warning: Error in <-: incorrect number of subscripts on matrix 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#376] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in <-: incorrect number of subscripts on matrix 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#582] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument Warning in max(table(S[, names(S) == x])) : no non-missing arguments to max; returning -Inf Warning: Error in :: result would be too long a vector 127: lapply 125: .blockRandom 124: %>% 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#480] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in :: result would be too long a vector 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#582] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument Warning in max(table(S[, names(S) == x])) : no non-missing arguments to max; returning -Inf Warning: Error in :: result would be too long a vector 127: lapply 125: .blockRandom 124: %>% 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#480] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in :: result would be too long a vector 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#582] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid=297502 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297502 debug output$download values$wuid=297502 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297502 debug output$download values$wuid=297502 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297502 debug output$download values$wuid=297502 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297502 debug output$download values$wuid=297502 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297502 debug output$download values$wuid=297502 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297502 debug output$download values$wuid=297502 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297502 debug output$download values$wuid=297502 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpj7d3bm/file166271288270c4.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 33563 DEBUG: wuid= DEBUG: rv wuid=297503 DEBUG: wuid=297503 debug output$download values$wuid=297503 debug output$download values$wuid=297503 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=297503 debug output$download values$wuid=297503 Execution halted