Listening on http://127.0.0.1:34029
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Loading required package: base64enc
Loading required package: jsonlite

Attaching package: 'jsonlite'

The following object is masked from 'package:shiny':

    validate

Loading required package: httr
Loading required package: DT

Attaching package: 'DT'

The following objects are masked from 'package:shiny':

    dataTableOutput, renderDataTable

Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: XML
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
System configuration: Metabolomics XCalibur 
debug output$download values$wuid=
System configuration: Metabolomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Metabolomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Metabolomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Metabolomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Metabolomics XCalibur M-CLASS48_48
Warning: Error in protViz::assignPlatePosition: More samples than available plate positions!
  129: stop
  128: protViz::assignPlatePosition
  123: <reactive:getBfabricContent> [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#451]
  107: getBfabricContent
  104: exprFunc
  103: widgetFunc
  102: ::
htmlwidgets
shinyRenderWidget
  101: func
   88: renderFunc
   87: renderFunc
   83: renderFunc
   82: output$table
    1: runApp
Warning: Error in protViz::assignPlatePosition: More samples than available plate positions!
  100: <Anonymous>
   99: stop
   98: getBfabricContent
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#582]
   96: func
   83: renderFunc
   82: output$download
    1: runApp
System configuration: Metabolomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Metabolomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Metabolomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Metabolomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Metabolomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
Composing XCalibur MS configuration file /tmp/RtmpYYVBmj/file371b1510e59c0d.csv ...
Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE,  :
  appending column names to file
containerid =  32851
debug output$download values$wuid=299175
debug output$download values$wuid=299175
System configuration: Metabolomics XCalibur M-CLASS48_48
debug output$download values$wuid=299175
debug output$download values$wuid=299175
System configuration: Metabolomics XCalibur M-CLASS48_48
debug output$download values$wuid=299175
debug output$download values$wuid=299175
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Metabolomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
Composing XCalibur MS configuration file /tmp/RtmpYYVBmj/file371b15605e1c43.csv ...
Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE,  :
  appending column names to file
containerid =  34118
debug output$download values$wuid=299176
debug output$download values$wuid=299176
Composing XCalibur MS configuration file /tmp/RtmpYYVBmj/file371b155340d672.csv ...
Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE,  :
  appending column names to file
containerid =  34118
debug output$download values$wuid=299177
debug output$download values$wuid=299177
System configuration: Metabolomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Metabolomics XCalibur M-CLASS48_48
Warning: Error in protViz::assignPlatePosition: More samples than available plate positions!
  129: stop
  128: protViz::assignPlatePosition
  123: <reactive:getBfabricContent> [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#451]
  107: getBfabricContent
  104: exprFunc
  103: widgetFunc
  102: ::
htmlwidgets
shinyRenderWidget
  101: func
   88: renderFunc
   87: renderFunc
   83: renderFunc
   82: output$table
    1: runApp
Warning: Error in protViz::assignPlatePosition: More samples than available plate positions!
  100: <Anonymous>
   99: stop
   98: getBfabricContent
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#582]
   96: func
   83: renderFunc
   82: output$download
    1: runApp
System configuration: Metabolomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Metabolomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
Composing XCalibur MS configuration file /tmp/RtmpYYVBmj/file371b153f6cf0d8.csv ...
Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE,  :
  appending column names to file
containerid =  32851
debug output$download values$wuid=299178
debug output$download values$wuid=299178


Execution halted