Listening on http://127.0.0.1:44785
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Loading required package: base64enc
Loading required package: jsonlite

Attaching package: 'jsonlite'

The following object is masked from 'package:shiny':

    validate

Loading required package: httr
Loading required package: DT

Attaching package: 'DT'

The following objects are masked from 'package:shiny':

    dataTableOutput, renderDataTable

Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: XML
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
Composing XCalibur MS configuration file /tmp/Rtmp1KXbIu/file17282763799eb9.csv ...
Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE,  :
  appending column names to file
containerid =  34343
debug output$download values$wuid=300112
debug output$download values$wuid=300112
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics HyStar M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics HyStar nanoElute54_54
debug output$download values$wuid=
System configuration: Proteomics HyStar nanoElute54_54
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar nanoElute54_54
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar nanoElute54_54
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar nanoElute54_54
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar nanoElute54_54
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar nanoElute54_54
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar nanoElute54_54
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar nanoElute54_54
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
Composing HyStar XML MS configuration file /tmp/Rtmp1KXbIu/file17282713212ab2.xml ...
Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) :
  empty XML document
Saving XML ...
containerid =  33903
DEBUG: wuid=
DEBUG: rv wuid=300118
DEBUG: wuid=300118
debug output$download values$wuid=300118
debug output$download values$wuid=300118
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument
debug output$download values$wuid=300118
debug output$download values$wuid=300118
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
Composing XCalibur MS configuration file /tmp/Rtmp1KXbIu/file1728271a371089.csv ...
Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE,  :
  appending column names to file
containerid =  34248
debug output$download values$wuid=300127
debug output$download values$wuid=300127
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
Composing XCalibur MS configuration file /tmp/Rtmp1KXbIu/file17282756b95002.csv ...
Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE,  :
  appending column names to file
containerid =  34301
debug output$download values$wuid=300128
debug output$download values$wuid=300128
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
Warning: Error in if: missing value where TRUE/FALSE needed
  127: .autoQC
  126: .clean
  125: generate_queue
  124: bfabricShiny:::generate_queue_order
  123: <reactive:getBfabricContent> [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#397]
  107: getBfabricContent
  104: exprFunc
  103: widgetFunc
  102: ::
htmlwidgets
shinyRenderWidget
  101: func
   88: renderFunc
   87: renderFunc
   83: renderFunc
   82: output$table
    1: runApp
Warning: Error in if: missing value where TRUE/FALSE needed
  100: <Anonymous>
   99: stop
   98: getBfabricContent
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#582]
   96: func
   83: renderFunc
   82: output$download
    1: runApp
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
Composing XCalibur MS configuration file /tmp/Rtmp1KXbIu/file172827722477b3.csv ...
Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE,  :
  appending column names to file
containerid =  34336
debug output$download values$wuid=300129
debug output$download values$wuid=300129
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics HyStar M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics HyStar nanoElute54_54
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument
debug output$download values$wuid=
debug output$download values$wuid=
Composing HyStar XML MS configuration file /tmp/Rtmp1KXbIu/file1728273f069e3f.xml ...
Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) :
  empty XML document
Saving XML ...
containerid =  34254
DEBUG: wuid=
DEBUG: rv wuid=300130
DEBUG: wuid=300130
debug output$download values$wuid=300130
debug output$download values$wuid=300130
System configuration: Proteomics HyStar EVOSEP1x12x8
DEBUG
container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument
debug output$download values$wuid=300130
debug output$download values$wuid=300130
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
Composing XCalibur MS configuration file /tmp/Rtmp1KXbIu/file17282770e561f8.csv ...
Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE,  :
  appending column names to file
containerid =  34230
debug output$download values$wuid=300148
debug output$download values$wuid=300148
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
Composing XCalibur MS configuration file /tmp/Rtmp1KXbIu/file1728271bffd4e4.csv ...
Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE,  :
  appending column names to file
containerid =  34337
debug output$download values$wuid=300153
debug output$download values$wuid=300153
System configuration:   
debug output$download values$wuid=
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
read login pfeeder.
System configuration: Proteomics XCalibur 
debug output$download values$wuid=
read webservicepassword for login pfeeder.
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
Warning: Error in $: $ operator is invalid for atomic vectors
  101: paste0
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#326]
   96: func
   83: renderFunc
   82: output$sample
    1: runApp
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
System configuration: Proteomics XCalibur M-CLASS48_48
debug output$download values$wuid=
debug output$download values$wuid=
Composing XCalibur MS configuration file /tmp/Rtmp1KXbIu/file17282771e0ea30.csv ...
Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE,  :
  appending column names to file
containerid =  34360
debug output$download values$wuid=300195
debug output$download values$wuid=300195


Execution halted