Listening on http://127.0.0.1:42187 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: base64enc Loading required package: jsonlite Attaching package: 'jsonlite' The following object is masked from 'package:shiny': validate Loading required package: httr Loading required package: DT Attaching package: 'DT' The following objects are masked from 'package:shiny': dataTableOutput, renderDataTable Loading required package: dplyr Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Loading required package: XML System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 Warning: Error in data.frame: arguments imply differing number of rows: 1, 0 129: stop 128: data.frame 127: .autoQC 126: .autoQC01 125: generate_queue 124: bfabricShiny:::generate_queue_order 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#418] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in data.frame: arguments imply differing number of rows: 1, 0 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#603] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 Warning: Error in data.frame: arguments imply differing number of rows: 1, 0 129: stop 128: data.frame 127: .autoQC 126: .autoQC01 125: generate_queue 124: bfabricShiny:::generate_queue_order 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#418] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in data.frame: arguments imply differing number of rows: 1, 0 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#603] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmphos5fO/file955da6dae03ef.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36130 debug output$download values$wuid=313361 debug output$download values$wuid=313361 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmphos5fO/file955da44575b8f.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 35615 debug output$download values$wuid=313373 debug output$download values$wuid=313373 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmphos5fO/file955da27567b8f.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36088 debug output$download values$wuid=313376 debug output$download values$wuid=313376 System configuration: Proteomics XCalibur M-CLASS48_48 Warning: Error in [[: subscript out of bounds 127: 126: .generate_template_base 125: generate_queue 124: bfabricShiny:::generate_queue_order 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#418] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in [[: subscript out of bounds 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#603] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=313376 System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=313376 debug output$download values$wuid=313376 System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=313376 debug output$download values$wuid=313376 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmphos5fO/file955da1d204341.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36072 debug output$download values$wuid=313386 debug output$download values$wuid=313386 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#347] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Metabolomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Metabolomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Metabolomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmphos5fO/file955daca54520.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 35872 debug output$download values$wuid=313399 debug output$download values$wuid=313399 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmphos5fO/file955da586896f1.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36080 debug output$download values$wuid=313401 debug output$download values$wuid=313401 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmphos5fO/file955da6b4ae8fd.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 36024 DEBUG: wuid= DEBUG: rv wuid=313402 DEBUG: wuid=313402 debug output$download values$wuid=313402 debug output$download values$wuid=313402 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=313402 debug output$download values$wuid=313402 Execution halted