Listening on http://127.0.0.1:37429 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save Loading required package: base64enc Loading required package: jsonlite Attaching package: 'jsonlite' The following object is masked from 'package:shiny': validate Loading required package: httr Loading required package: DT Attaching package: 'DT' The following objects are masked from 'package:shiny': dataTableOutput, renderDataTable Loading required package: dplyr Attaching package: 'dplyr' The following objects are masked from 'package:stats': filter, lag The following objects are masked from 'package:base': intersect, setdiff, setequal, union Loading required package: XML System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a58729754d89.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36390 debug output$download values$wuid=315567 debug output$download values$wuid=315567 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpco9LrX/file16a5877db9bb37.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 36393 DEBUG: wuid= DEBUG: rv wuid=315569 DEBUG: wuid=315569 debug output$download values$wuid=315569 debug output$download values$wuid=315569 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=315569 debug output$download values$wuid=315569 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpco9LrX/file16a58713c83f43.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 36355 DEBUG: wuid= DEBUG: rv wuid=315572 DEBUG: wuid=315572 debug output$download values$wuid=315572 debug output$download values$wuid=315572 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=315572 debug output$download values$wuid=315572 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a5872e8f0842.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36388 debug output$download values$wuid=315585 debug output$download values$wuid=315585 System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=315585 debug output$download values$wuid=315585 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a5871273bd80.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36374 debug output$download values$wuid=315586 debug output$download values$wuid=315586 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a5874e6e04aa.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36388 debug output$download values$wuid=315587 debug output$download values$wuid=315587 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpco9LrX/file16a58722e97f8f.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 36360 DEBUG: wuid= DEBUG: rv wuid=315595 DEBUG: wuid=315595 debug output$download values$wuid=315595 debug output$download values$wuid=315595 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=315595 debug output$download values$wuid=315595 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a58744d8014f.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36376 debug output$download values$wuid=315607 debug output$download values$wuid=315607 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a587455c582c.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36398 debug output$download values$wuid=315608 debug output$download values$wuid=315608 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a5871423e0d7.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36357 debug output$download values$wuid=315612 debug output$download values$wuid=315612 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a587709b2b15.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36395 debug output$download values$wuid=315643 debug output$download values$wuid=315643 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 Warning: Error in if: missing value where TRUE/FALSE needed 127: .autoQC 126: .autoQC01 125: generate_queue 124: bfabricShiny:::generate_queue_order 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#417] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#602] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a58768a8ccad.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36395 debug output$download values$wuid=315644 debug output$download values$wuid=315644 System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=315644 debug output$download values$wuid=315644 System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=315644 debug output$download values$wuid=315644 System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=315644 debug output$download values$wuid=315644 System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=315644 debug output$download values$wuid=315644 System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=315644 debug output$download values$wuid=315644 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a58774f81e26.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36395 debug output$download values$wuid=315645 debug output$download values$wuid=315645 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a58747ac4322.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36395 debug output$download values$wuid=315646 debug output$download values$wuid=315646 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a5872b862d92.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36395 debug output$download values$wuid=315647 debug output$download values$wuid=315647 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a58768b5e541.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36372 debug output$download values$wuid=315648 debug output$download values$wuid=315648 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpco9LrX/file16a5874cbbe54a.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 36425 DEBUG: wuid= DEBUG: rv wuid=315673 DEBUG: wuid=315673 debug output$download values$wuid=315673 debug output$download values$wuid=315673 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=315673 debug output$download values$wuid=315673 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a587545bcd37.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36411 debug output$download values$wuid=315681 debug output$download values$wuid=315681 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a587355e9af0.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36060 debug output$download values$wuid=315754 debug output$download values$wuid=315754 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a5876311496d.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36442 debug output$download values$wuid=315755 debug output$download values$wuid=315755 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a58717e73dd0.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 28115 debug output$download values$wuid=315758 debug output$download values$wuid=315758 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a587347dfadb.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36445 debug output$download values$wuid=315773 debug output$download values$wuid=315773 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a5877f63a0fa.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36331 debug output$download values$wuid=315840 debug output$download values$wuid=315840 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a5872d67064.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36496 debug output$download values$wuid=315841 debug output$download values$wuid=315841 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a58716b75a8e.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36151 debug output$download values$wuid=315871 debug output$download values$wuid=315871 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=315755 debug output$download values$wuid=315755 System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=315755 debug output$download values$wuid=315755 System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a5876b8a0555.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36463 debug output$download values$wuid=315873 debug output$download values$wuid=315873 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpco9LrX/file16a58742ad6994.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 36479 DEBUG: wuid= DEBUG: rv wuid=315881 DEBUG: wuid=315881 debug output$download values$wuid=315881 debug output$download values$wuid=315881 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=315881 debug output$download values$wuid=315881 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpco9LrX/file16a58741e76278.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 36393 DEBUG: wuid= DEBUG: rv wuid=315886 DEBUG: wuid=315886 debug output$download values$wuid=315886 debug output$download values$wuid=315886 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=315886 debug output$download values$wuid=315886 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a5872a78748c.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36151 debug output$download values$wuid=315896 debug output$download values$wuid=315896 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a5871612d468.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36453 debug output$download values$wuid=315897 debug output$download values$wuid=315897 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a5872ce22149.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36467 debug output$download values$wuid=315921 debug output$download values$wuid=315921 System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=315921 debug output$download values$wuid=315921 System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=315921 debug output$download values$wuid=315921 System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid=315921 debug output$download values$wuid=315921 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a5871e1aacc5.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36383 debug output$download values$wuid=315927 debug output$download values$wuid=315927 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpco9LrX/file16a587497a4bf6.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 36355 DEBUG: wuid= DEBUG: rv wuid=315944 DEBUG: wuid=315944 debug output$download values$wuid=315944 debug output$download values$wuid=315944 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=315944 debug output$download values$wuid=315944 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a5877fb70e90.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36523 debug output$download values$wuid=315968 debug output$download values$wuid=315968 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a58727ddddce.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36537 debug output$download values$wuid=315970 debug output$download values$wuid=315970 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a587525cd26e.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36507 debug output$download values$wuid=315975 debug output$download values$wuid=315975 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: The select input "login" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. Warning: The select input "sample" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. System configuration: Proteomics XCalibur M-CLASS48_48 Warning: Error in [[: subscript out of bounds 127: 126: .generate_template_base 125: generate_queue 124: bfabricShiny:::generate_queue_order 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#417] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in [[: subscript out of bounds 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#602] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Warning: The select input "sample" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. System configuration: Proteomics XCalibur M-CLASS48_48 Warning: Error in [[: subscript out of bounds 127: 126: .generate_template_base 125: generate_queue 124: bfabricShiny:::generate_queue_order 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#417] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in [[: subscript out of bounds 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#602] 96: func 83: renderFunc 82: output$download 1: runApp Warning: The select input "login" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a58744975698.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36500 debug output$download values$wuid=316003 debug output$download values$wuid=316003 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a58717ce808e.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36531 debug output$download values$wuid=316004 debug output$download values$wuid=316004 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: The select input "sample" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. Warning: The select input "login" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic. System configuration: Proteomics XCalibur M-CLASS48_48 Warning: Error in [[: subscript out of bounds 127: 126: .generate_template_base 125: generate_queue 124: bfabricShiny:::generate_queue_order 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#417] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in [[: subscript out of bounds 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#602] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 Warning: Error in if: missing value where TRUE/FALSE needed 127: .autoQC 126: .autoQC01 125: generate_queue 124: bfabricShiny:::generate_queue_order 123: [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#417] 107: getBfabricContent 104: exprFunc 103: widgetFunc 102: :: htmlwidgets shinyRenderWidget 101: func 88: renderFunc 87: renderFunc 83: renderFunc 82: output$table 1: runApp Warning: Error in if: missing value where TRUE/FALSE needed 100: 99: stop 98: getBfabricContent 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#602] 96: func 83: renderFunc 82: output$download 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a58719024d73.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 3127 debug output$download values$wuid=316020 debug output$download values$wuid=316020 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a58720fa788b.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36531 debug output$download values$wuid=316061 debug output$download values$wuid=316061 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, table_row_last_clicked, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpco9LrX/file16a58727622221.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 36360 DEBUG: wuid= DEBUG: rv wuid=316072 DEBUG: wuid=316072 debug output$download values$wuid=316072 debug output$download values$wuid=316072 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=316072 debug output$download values$wuid=316072 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpco9LrX/file16a5871c47d9ef.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 36524 DEBUG: wuid= DEBUG: rv wuid=316085 DEBUG: wuid=316085 debug output$download values$wuid=316085 debug output$download values$wuid=316085 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=316085 debug output$download values$wuid=316085 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpco9LrX/file16a587264a8f6e.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 36355 DEBUG: wuid= DEBUG: rv wuid=316100 DEBUG: wuid=316100 debug output$download values$wuid=316100 debug output$download values$wuid=316100 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=316100 debug output$download values$wuid=316100 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics HyStar debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, generate, lcSystem, instrument debug output$download values$wuid= debug output$download values$wuid= Composing HyStar XML MS configuration file /tmp/Rtmpco9LrX/file16a58740460497.xml ... Warning in xmlRoot.XMLInternalDocument(currentNodes[[1]]) : empty XML document Saving XML ... containerid = 35070 DEBUG: wuid= DEBUG: rv wuid=316106 DEBUG: wuid=316106 debug output$download values$wuid=316106 debug output$download values$wuid=316106 System configuration: Proteomics HyStar EVOSEP1x12x8 DEBUG container, start1, start2, start3, end1, end2, end3, QC01m, QC01o, QC02m, QC02o, QC4Lm, QC4Lo, cleanm, cleano, startposition, targets, sample, login, table_cell_clicked, table_search, table_state, table_rows_all, table_rows_current, table_cells_selected, table_columns_selected, table_rows_selected, clean, autoQC4L, autoQC02, autoQC01, containerType, method, instrumentControlSoftware, acquisitionType, area, folder, testmethods, replicates, download, generate, lcSystem, instrument debug output$download values$wuid=316106 debug output$download values$wuid=316106 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a58772e99e38.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36535 debug output$download values$wuid=316135 debug output$download values$wuid=316135 System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a587332fa2d0.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 30737 debug output$download values$wuid=316136 debug output$download values$wuid=316136 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a5875881fae.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 36535 debug output$download values$wuid=316137 debug output$download values$wuid=316137 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics HyStar nanoElute54_54 debug output$download values$wuid= System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= Composing XCalibur MS configuration file /tmp/Rtmpco9LrX/file16a587145baf73.csv ... Warning in write.table(res, file = fn, sep = ",", row.names = FALSE, append = TRUE, : appending column names to file containerid = 35134 debug output$download values$wuid=316149 debug output$download values$wuid=316149 System configuration: debug output$download values$wuid= read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. read login pfeeder. System configuration: Proteomics XCalibur debug output$download values$wuid= read webservicepassword for login pfeeder. System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 101: paste0 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/queue_generator10/server.R#346] 96: func 83: renderFunc 82: output$sample 1: runApp System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid= System configuration: Proteomics XCalibur M-CLASS48_48 debug output$download values$wuid= debug output$download values$wuid=