Listening on http://127.0.0.1:40175
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#77]
  96: func
  83: renderFunc
  82: output$peptides
   1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#86]
  96: func
  83: renderFunc
  82: output$fragments
   1: runApp
1
20210608_002_S300848_DynabeadsM-280Streptavidin.raw20210608_003_S300849_DynabeadsM-270Streptavidin.raw
NA
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning in parallel::mclapply(rf, FUN = rawrr::readChromatogram, mass = ion,  :
  all scheduled cores encountered errors in user code
Warning in y[[i]]$peptide <- ion.peptide[i] : Coercing LHS to a list
Warning: Error in <-: more elements supplied than there are to replace
  218: FUN [/export/data01/shiny/rawrr/server.R#169]
  217: lapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#165]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#202]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
1
20210608_002_S300848_DynabeadsM-280Streptavidin.raw20210608_003_S300849_DynabeadsM-270Streptavidin.raw
YDSAPATDGSGTALGWTVAWK
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning in parallel::mclapply(rf, FUN = rawrr::readChromatogram, mass = ion,  :
  all scheduled cores encountered errors in user code
Warning in y[[i]]$peptide <- ion.peptide[i] : Coercing LHS to a list
Warning: Error in <-: more elements supplied than there are to replace
  218: FUN [/export/data01/shiny/rawrr/server.R#169]
  217: lapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#165]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#202]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
1
20210608_002_S300848_DynabeadsM-280Streptavidin.raw20210608_003_S300849_DynabeadsM-270Streptavidin.raw
STLVGHDTFTK
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning in parallel::mclapply(rf, FUN = rawrr::readChromatogram, mass = ion,  :
  all scheduled cores encountered errors in user code
Warning in y[[i]]$peptide <- ion.peptide[i] : Coercing LHS to a list
Warning: Error in <-: more elements supplied than there are to replace
  218: FUN [/export/data01/shiny/rawrr/server.R#169]
  217: lapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#165]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#202]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
1
20210608_002_S300848_DynabeadsM-280Streptavidin.raw20210608_003_S300849_DynabeadsM-270Streptavidin.raw20210608_005_S300851_DynabeadsMyOneStreptavidinT1.raw
STLVGHDTFTK
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning in parallel::mclapply(rf, FUN = rawrr::readChromatogram, mass = ion,  :
  all scheduled cores encountered errors in user code
Warning in y[[i]]$peptide <- ion.peptide[i] : Coercing LHS to a list
Warning: Error in <-: more elements supplied than there are to replace
  218: FUN [/export/data01/shiny/rawrr/server.R#169]
  217: lapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#165]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#202]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#77]
  96: func
  83: renderFunc
  82: output$peptides
   1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#86]
  96: func
  83: renderFunc
  82: output$fragments
   1: runApp
1
20230112_001_autoQC01_20230128174729.raw
NA
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#156]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#202]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
2
20230112_001_autoQC01_20230128174729.raw
VEATFGVDESNAKYILAGVENSK
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#156]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#202]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#156]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#202]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#77]
  96: func
  83: renderFunc
  82: output$peptides
   1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#86]
  96: func
  83: renderFunc
  82: output$fragments
   1: runApp
1
20221005_001_autoQC01.raw
NA
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#156]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#202]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
2
20221005_001_autoQC01.raw
VEATFGVDESNAKYILAGVENSK
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#156]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#202]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#156]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#202]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#77]
  96: func
  83: renderFunc
  82: output$peptides
   1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#86]
  96: func
  83: renderFunc
  82: output$fragments
   1: runApp
1
NA
NA
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#156]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#202]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
1
20210608_003_S300849_DynabeadsM-270Streptavidin.raw
NA
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#156]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#202]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
1
20210608_003_S300849_DynabeadsM-270Streptavidin.raw
NAHSATTWSGQYVGGAEAR
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#156]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#202]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
Warning in dir.create(rawfileReaderDLLsPath, recursive = TRUE) :
  cannot create dir '/var/www/.cache', reason 'Permission denied'
Warning in download.file(file.path(sourceUrl, dll), destfile = destfile,  :
  URL https://github.com/thermofisherlsms/ThermoRawFileParser/raw/master/packages/ThermoFisher.CommonCore.RawFileReader.4.0.26/lib//ThermoFisher.CommonCore.Data.dll: cannot open destfile '/var/www/.cache/R/rawrr/rawrrassembly/ThermoFisher.CommonCore.Data.dll', reason 'No such file or directory'
Warning in download.file(file.path(sourceUrl, dll), destfile = destfile,  :
  download had nonzero exit status
Warning in download.file(file.path(sourceUrl, dll), destfile = destfile,  :
  URL https://github.com/thermofisherlsms/ThermoRawFileParser/raw/master/packages/ThermoFisher.CommonCore.RawFileReader.4.0.26/lib//ThermoFisher.CommonCore.MassPrecisionEstimator.dll: cannot open destfile '/var/www/.cache/R/rawrr/rawrrassembly/ThermoFisher.CommonCore.MassPrecisionEstimator.dll', reason 'No such file or directory'
Warning in download.file(file.path(sourceUrl, dll), destfile = destfile,  :
  download had nonzero exit status
Warning in download.file(file.path(sourceUrl, dll), destfile = destfile,  :
  URL https://github.com/thermofisherlsms/ThermoRawFileParser/raw/master/packages/ThermoFisher.CommonCore.RawFileReader.4.0.26/lib//ThermoFisher.CommonCore.RawFileReader.dll: cannot open destfile '/var/www/.cache/R/rawrr/rawrrassembly/ThermoFisher.CommonCore.RawFileReader.dll', reason 'No such file or directory'
Warning in download.file(file.path(sourceUrl, dll), destfile = destfile,  :
  download had nonzero exit status
Warning in dir.create(rawrrAssemblyPath(), recursive = TRUE) :
  cannot create dir '/var/www/.cache', reason 'Permission denied'
Warning in download.file(sourceUrl, destfile = rawrrAssembly, mode = "wb",  :
  URL https://github.com/fgcz/rawrr/releases/download/1.7.10/rawrr.1.7.10.exe: cannot open destfile '/var/www/.cache/R/rawrr/rawrrassembly/rawrr.exe', reason 'No such file or directory'
Warning in download.file(sourceUrl, destfile = rawrrAssembly, mode = "wb",  :
  download had nonzero exit status
MD5 NA /var/www/.cache/R/rawrr/rawrrassembly/rawrr.exe
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#80]
  96: func
  83: renderFunc
  82: output$peptides
   1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#89]
  96: func
  83: renderFunc
  82: output$fragments
   1: runApp
1
NA
NA
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#159]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#205]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
1
20210608_002_S300848_DynabeadsM-280Streptavidin.raw
NA
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#159]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#205]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
1
20210608_002_S300848_DynabeadsM-280Streptavidin.raw
NAHSATTWSGQYVGGAEAR
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#159]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#205]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#80]
  96: func
  83: renderFunc
  82: output$peptides
   1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#89]
  96: func
  83: renderFunc
  82: output$fragments
   1: runApp
1
NA
NA
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#159]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#205]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
1
20210608_004_S300850_DynabeadsMyOneStreptavidinC1.raw
NA
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#159]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#205]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
1
20210608_004_S300850_DynabeadsMyOneStreptavidinC1.raw
YDSAPATDGSGTALGWTVAWK
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#159]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#205]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#80]
  96: func
  83: renderFunc
  82: output$peptides
   1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#89]
  96: func
  83: renderFunc
  82: output$fragments
   1: runApp
1
NA
NA
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#159]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#205]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
1
20210608_003_S300849_DynabeadsM-270Streptavidin.raw
NA
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#159]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#205]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
1
20210608_003_S300849_DynabeadsM-270Streptavidin.raw
NAHSATTWSGQYVGGAEAR
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#159]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#205]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
Warning in dir.create(rawfileReaderDLLsPath, recursive = TRUE) :
  cannot create dir '/var/www/.cache', reason 'Permission denied'
Warning in download.file(file.path(sourceUrl, dll), destfile = destfile,  :
  URL https://github.com/thermofisherlsms/ThermoRawFileParser/raw/master/packages/ThermoFisher.CommonCore.RawFileReader.4.0.26/lib//ThermoFisher.CommonCore.Data.dll: cannot open destfile '/var/www/.cache/R/rawrr/rawrrassembly/ThermoFisher.CommonCore.Data.dll', reason 'No such file or directory'
Warning in download.file(file.path(sourceUrl, dll), destfile = destfile,  :
  download had nonzero exit status
Warning in download.file(file.path(sourceUrl, dll), destfile = destfile,  :
  URL https://github.com/thermofisherlsms/ThermoRawFileParser/raw/master/packages/ThermoFisher.CommonCore.RawFileReader.4.0.26/lib//ThermoFisher.CommonCore.MassPrecisionEstimator.dll: cannot open destfile '/var/www/.cache/R/rawrr/rawrrassembly/ThermoFisher.CommonCore.MassPrecisionEstimator.dll', reason 'No such file or directory'
Warning in download.file(file.path(sourceUrl, dll), destfile = destfile,  :
  download had nonzero exit status
Warning in download.file(file.path(sourceUrl, dll), destfile = destfile,  :
  URL https://github.com/thermofisherlsms/ThermoRawFileParser/raw/master/packages/ThermoFisher.CommonCore.RawFileReader.4.0.26/lib//ThermoFisher.CommonCore.RawFileReader.dll: cannot open destfile '/var/www/.cache/R/rawrr/rawrrassembly/ThermoFisher.CommonCore.RawFileReader.dll', reason 'No such file or directory'
Warning in download.file(file.path(sourceUrl, dll), destfile = destfile,  :
  download had nonzero exit status
Warning in dir.create(rawrrAssemblyPath(), recursive = TRUE) :
  cannot create dir '/var/www/.cache', reason 'Permission denied'
Warning in download.file(sourceUrl, destfile = rawrrAssembly, mode = "wb",  :
  URL https://github.com/fgcz/rawrr/releases/download/1.7.10/rawrr.1.7.10.exe: cannot open destfile '/var/www/.cache/R/rawrr/rawrrassembly/rawrr.exe', reason 'No such file or directory'
Warning in download.file(sourceUrl, destfile = rawrrAssembly, mode = "wb",  :
  download had nonzero exit status
MD5 NA /var/www/.cache/R/rawrr/rawrrassembly/rawrr.exe
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#81]
  96: func
  83: renderFunc
  82: output$peptides
   1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#90]
  96: func
  83: renderFunc
  82: output$fragments
   1: runApp
1
NA
NA
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#160]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#206]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
1
20210608_004_S300850_DynabeadsMyOneStreptavidinC1.raw
NA
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#160]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#206]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
1
20210608_004_S300850_DynabeadsMyOneStreptavidinC1.raw
NAHSATTWSGQYVGGAEAR
'ThermoFisher.CommonCore.Data.dll' is missing.
'ThermoFisher.CommonCore.MassPrecisionEstimator.dll' is missing.
'ThermoFisher.CommonCore.RawFileReader.dll' is missing.
Warning: Error in .checkRawFileReaderDLLs: 'ThermoFisher.CommonCore.*.dll' files are not available on the system.
Run 'rawrr::installRawFileReaderDLLs()' or setenv MONO_PATH to the location where the assemblies are located.
For more information, type '?ThermoFisher'.
  219: FUN
  218: .checkRawFileReaderDLLs
  217: .isAssemblyWorking
  216: FUN
  215: lapply
  214: parallel::mclapply
  213: eventReactiveValueFunc [/export/data01/shiny/rawrr/server.R#160]
  211: valueFunc
  198: func
  196: f
  195: Reduce
  186: do
  185: hybrid_chain
  184: <reactive>
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: getXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#206]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp