Listening on http://127.0.0.1:42555
0
Warning: Error in [[: attempt to select less than one element in get1index
  99: paste
  97: renderTable [/export/data01/shiny/rawrr/server.R#34]
  96: func
  83: renderFunc
  82: output$statistics
   1: runApp
Warning: Error in <reactive:getRootDir>: file.exists(d) is not TRUE
  138: <Anonymous>
  137: stop
  136: stopifnot
  135: <reactive:getRootDir> [/export/data01/shiny/rawrr/server.R#55]
  119: getRootDir
  117: <reactive:getRawFiles> [/export/data01/shiny/rawrr/server.R#60]
  101: getRawFiles
   97: renderUI [/export/data01/shiny/rawrr/server.R#69]
   96: func
   83: renderFunc
   82: output$rawfiles
    1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#112]
  96: func
  83: renderFunc
  82: output$peptides
   1: runApp
Warning: Error in [[: attempt to select less than one element in get1index
  100: force
   99: restoreInput
   98: selectInput
   97: renderUI [/export/data01/shiny/rawrr/server.R#121]
   96: func
   83: renderFunc
   82: output$ions
    1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#128]
  96: func
  83: renderFunc
  82: output$fragments
   1: runApp
Warning: Error in [[: attempt to select less than one element in get1index
  114: paste
   97: renderUI [/export/data01/shiny/rawrr/server.R#140]
   96: func
   83: renderFunc
   82: output$tabs
    1: runApp
0
0
0
Warning: Error in [[: attempt to select less than one element in get1index
  99: paste
  97: renderTable [/export/data01/shiny/rawrr/server.R#34]
  96: func
  83: renderFunc
  82: output$statistics
   1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#112]
  96: func
  83: renderFunc
  82: output$peptides
   1: runApp
Warning: Error in [[: attempt to select less than one element in get1index
  100: force
   99: restoreInput
   98: selectInput
   97: renderUI [/export/data01/shiny/rawrr/server.R#121]
   96: func
   83: renderFunc
   82: output$ions
    1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#128]
  96: func
  83: renderFunc
  82: output$fragments
   1: runApp
Warning: Error in [[: attempt to select less than one element in get1index
  114: paste
   97: renderUI [/export/data01/shiny/rawrr/server.R#140]
   96: func
   83: renderFunc
   82: output$tabs
    1: runApp
0
0
0
0
2
Warning: `aes_string()` was deprecated in ggplot2 3.0.0.
ℹ Please use tidy evaluation ideoms with `aes()`
Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
Warning: Error in lapply: object 'fitPeak.rawrrChromatogram' not found
  186: lapply [/export/data01/shiny/rawrr/server.R#256]
  185: <reactive:processXIC> [/export/data01/shiny/rawrr/server.R#256]
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: processXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#285]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
Warning: Error in lapply: object 'fitPeak.rawrrChromatogram' not found
  101: <Anonymous>
  100: stop
   99: processXIC
   97: renderTable [/export/data01/shiny/rawrr/server.R#32]
   96: func
   83: renderFunc
   82: output$statistics
    1: runApp
Warning: Error in <reactive:processXIC>: object 'pickPeak.rawrrChromatogram' not found
  185: <reactive:processXIC> [/export/data01/shiny/rawrr/server.R#261]
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: processXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#285]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
Warning: Error in <reactive:processXIC>: object 'pickPeak.rawrrChromatogram' not found
  101: <Anonymous>
  100: stop
   99: processXIC
   97: renderTable [/export/data01/shiny/rawrr/server.R#32]
   96: func
   83: renderFunc
   82: output$statistics
    1: runApp
0
Warning: Error in [[: attempt to select less than one element in get1index
  99: paste
  97: renderTable [/export/data01/shiny/rawrr/server.R#34]
  96: func
  83: renderFunc
  82: output$statistics
   1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#112]
  96: func
  83: renderFunc
  82: output$peptides
   1: runApp
Warning: Error in [[: attempt to select less than one element in get1index
  100: force
   99: restoreInput
   98: selectInput
   97: renderUI [/export/data01/shiny/rawrr/server.R#121]
   96: func
   83: renderFunc
   82: output$ions
    1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#128]
  96: func
  83: renderFunc
  82: output$fragments
   1: runApp
Warning: Error in [[: attempt to select less than one element in get1index
  114: paste
   97: renderUI [/export/data01/shiny/rawrr/server.R#140]
   96: func
   83: renderFunc
   82: output$tabs
    1: runApp
0
0
0
0
2
Warning: Error in lapply: object 'fitPeak.rawrrChromatogram' not found
  186: lapply
  185: <reactive:processXIC> [/export/data01/shiny/rawrr/server.R#256]
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: processXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#285]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
Warning: Error in lapply: object 'fitPeak.rawrrChromatogram' not found
  101: <Anonymous>
  100: stop
   99: processXIC
   97: renderTable [/export/data01/shiny/rawrr/server.R#32]
   96: func
   83: renderFunc
   82: output$statistics
    1: runApp
0
Warning: Error in [[: attempt to select less than one element in get1index
  99: paste
  97: renderTable [/export/data01/shiny/rawrr/server.R#34]
  96: func
  83: renderFunc
  82: output$statistics
   1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#112]
  96: func
  83: renderFunc
  82: output$peptides
   1: runApp
Warning: Error in [[: attempt to select less than one element in get1index
  100: force
   99: restoreInput
   98: selectInput
   97: renderUI [/export/data01/shiny/rawrr/server.R#121]
   96: func
   83: renderFunc
   82: output$ions
    1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#128]
  96: func
  83: renderFunc
  82: output$fragments
   1: runApp
Warning: Error in [[: attempt to select less than one element in get1index
  114: paste
   97: renderUI [/export/data01/shiny/rawrr/server.R#140]
   96: func
   83: renderFunc
   82: output$tabs
    1: runApp
0
0
1
1
Warning: Error in lapply: object 'fitPeak.rawrrChromatogram' not found
  186: lapply
  185: <reactive:processXIC> [/export/data01/shiny/rawrr/server.R#256]
  183: .func
  180: contextFunc
  179: env$runWith
  172: ctx$run
  171: self$.updateValue
  169: processXIC
  168: renderPlot [/export/data01/shiny/rawrr/server.R#285]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$xicPlot
    1: runApp
Warning: Error in lapply: object 'fitPeak.rawrrChromatogram' not found
  101: <Anonymous>
  100: stop
   99: processXIC
   97: renderTable [/export/data01/shiny/rawrr/server.R#32]
   96: func
   83: renderFunc
   82: output$statistics
    1: runApp
0
Warning: Error in [[: attempt to select less than one element in get1index
  99: paste
  97: renderTable [/export/data01/shiny/rawrr/server.R#34]
  96: func
  83: renderFunc
  82: output$statistics
   1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#112]
  96: func
  83: renderFunc
  82: output$peptides
   1: runApp
Warning: Error in [[: attempt to select less than one element in get1index
  100: force
   99: restoreInput
   98: selectInput
   97: renderUI [/export/data01/shiny/rawrr/server.R#121]
   96: func
   83: renderFunc
   82: output$ions
    1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/shiny/rawrr/server.R#128]
  96: func
  83: renderFunc
  82: output$fragments
   1: runApp
Warning: Error in [[: attempt to select less than one element in get1index
  114: paste
   97: renderUI [/export/data01/shiny/rawrr/server.R#140]
   96: func
   83: renderFunc
   82: output$tabs
    1: runApp
0
0
0